Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08228 ATGCACAAAGTTTTTCAGAGCACCTCTGGGTGTCCATTTGGTGAGGGATGCCATTTCCTGCACTATGTTCCTGGTGGCTTCAAATCTGTCTCTCAGATGATCAATGTTGGGAGCAATCCTGCTATTCCGCAAATGGGTAGAAATCCAACTGCTCCACCATCCTTCCCAGATGGGTCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTATAATACAGTTGAAGGTTGCAAATTTGGTGATAAATGTCACTTTGCCCATGGTGAATGGGAGCTTGGCAGGCCTACTGTTCCATCATATGAAGATACTCGTGGCTTGGGACAAATGCAAAGCAGCAGGGTTGGCGGACGAGTTGAGCCCCCACTTCCAGCTCATGGAGCTGCCGCCAGCTTTGGAGCCTCAGCTACTGCCAAGATTAGTATCAATGCTTCCCTAGCAGGAGCTATCATTGGAAAAAACGGTATCAACTCTAAACAAATCTGTCGTGTAACAGGAGCTAAGCTTTCCATAAGGGAACATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAGCTTATTCTAAATGTTAGTTCTGCCTCTGGGCCTCCAACGAAAAACATTACAGCACAGACTTCTGGCCCTGCAAGCAACTTCAAGACTAAGCTATGTGAAAACTTTGCCAAAGGTTCCTGCACTTTTGGAGAGAGGTGCCACTTCGCACATGGAACAGATGAACTACGCAAGACTGCGATATGA 786 0.4631 MHKVFQSTSGCPFGEGCHFLHYVPGGFKSVSQMINVGSNPAIPQMGRNPTAPPSFPDGSSPPVVKTRLCNKYNTVEGCKFGDKCHFAHGEWELGRPTVPSYEDTRGLGQMQSSRVGGRVEPPLPAHGAAASFGASATAKISINASLAGAIIGKNGINSKQICRVTGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPPTKNITAQTSGPASNFKTKLCENFAKGSCTFGERCHFAHGTDELRKTAI. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08228 261 Pfam RNA-binding, Nab2-type zinc finger 11 21 - -
Seca8g08228 261 Gene3D K Homology domain, type 1 131 224 IPR036612 GO:0003723
Seca8g08228 261 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 126 206 IPR036612 GO:0003723
Seca8g08228 261 Gene3D - 58 95 - -
Seca8g08228 261 Gene3D - 225 259 - -
Seca8g08228 261 SUPERFAMILY CCCH zinc finger 61 94 IPR036855 GO:0046872
Seca8g08228 261 SMART kh_6 134 204 IPR004087 GO:0003676
Seca8g08228 261 CDD KH-I_AtC3H36_like 139 203 - -
Seca8g08228 261 ProSiteProfiles Type-1 KH domain profile. 135 199 - -
Seca8g08228 261 FunFam Zinc finger CCCH domain-containing protein 222 258 - -
Seca8g08228 261 FunFam Zinc finger CCCH domain-containing protein 58 95 - -
Seca8g08228 261 Pfam KH domain 138 200 IPR004088 GO:0003723
Seca8g08228 261 ProSiteProfiles Zinc finger C3H1-type profile. 64 91 IPR000571 GO:0046872
Seca8g08228 261 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 116 IPR045877 GO:0003729
Seca8g08228 261 SMART c3hfinal6 65 90 IPR000571 GO:0046872
Seca8g08228 261 SMART c3hfinal6 227 253 IPR000571 GO:0046872
Seca8g08228 261 SUPERFAMILY CCCH zinc finger 226 258 IPR036855 GO:0046872
Seca8g08228 261 ProSiteProfiles Zinc finger C3H1-type profile. 227 254 IPR000571 GO:0046872
Seca8g08228 261 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 90 IPR000571 GO:0046872
Seca8g08228 261 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 252 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08228 Seca-Chr8 179838688 179845715 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g08228 KH_1 4.9e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08228 - - gmx:100818781 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08228 8 179838688 179845715 Seca8g08228 8 179838688 179845715 ECH