Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08225 ATGTCGTCGCGCAAGGGAAACTCTGAGAAGGAACTCCGTCGCGTGAAGAGGGAACGCCTCACCGAAAAGGAGCATCAACAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGCAGCAGCAGAACACCGCTAGTCGCAGGGTCATACGCTCTCAATTCCTCCAACTCAAGACTCTCATCAATGAGAAGAAGGATGATTTGATGAACACTGATTCTGACAAGTTCGATACCATCTTGAACCAGTTCGACAAGTTACACGACCAAGTTCAGAAGCCGAGAGAACAGGTTGCAGACGCTGAGGCACTTCTTGATCTCACACGTACATTGGTGGGATCTGTTAAATCTCTGGTGAACGAGGGTGTTACCCCTTCTCAGTTTGTTTCCTCTTTGCTCAAACACTATGCCCAACCTCCCAATAACTCCATCGATTGTAACTCCATCGATTGGCAAAAACTTGGCCTTGCTGTCTCCCCCGTTTTTCTCATGGTTCATGGCTCTTCTACCATGCTTGGTCCCATGGAAAATGAGTTAAAGCAACGCAAAACAGGAGTCCACAGAAAACGAGCTCCTCGCCCAACCACAACTGCCAGGCCTGAACAGCTTGATGATACTTCTGGGGAGGAAAAAACTGACACTGACAAAAACATGGCAACCATGTTCGAAATCTTGAGGAAAATGAAACGTGTCCCACTTGAAAACCTGATTTTCAACAGGATTTCTTTTGCTCAGACTGTGGAAAACTTGTTTGCCCTATCATTCTTAGTGAAAGATGGTCGTGCTGAGATCAGTCTCGATGAAAATCGTTCGCACTATGTTTCTCCTAAAAATGCTCCTGCTGCCAACTCTGTAATGTCAAAAGAAGTTTCTTACACTCATTTTATGTTCAGATATGATTACCAAGATTGGAAGTTAATGAAGGATATTGTGGCTGAGGGCAAGGAGCTAATGCCACATAGGATTCAATTTTGCACTGTGATCAACTCTCAGACTCAGGCAGAGATGGGTGGTGACAATTCCCAACCAGCTTTGGCTGTAACACCAATCAAGAAGCTATCACGGAATCGAGGGTTGGTTGTCCAGGAGGAAGCTGTTGTAGAAGAATCTCCTGAATGTGATGACGAAAATGCTTCCAAAGCTGCTGCAATCCGTCGGTGTAGGCGTAAGCTTCATTAA 1179 0.4521 MSSRKGNSEKELRRVKRERLTEKEHQQEQEEEEEEEEEEEQQQNTASRRVIRSQFLQLKTLINEKKDDLMNTDSDKFDTILNQFDKLHDQVQKPREQVADAEALLDLTRTLVGSVKSLVNEGVTPSQFVSSLLKHYAQPPNNSIDCNSIDWQKLGLAVSPVFLMVHGSSTMLGPMENELKQRKTGVHRKRAPRPTTTARPEQLDDTSGEEKTDTDKNMATMFEILRKMKRVPLENLIFNRISFAQTVENLFALSFLVKDGRAEISLDENRSHYVSPKNAPAANSVMSKEVSYTHFMFRYDYQDWKLMKDIVAEGKELMPHRIQFCTVINSQTQAEMGGDNSQPALAVTPIKKLSRNRGLVVQEEAVVEESPECDDENASKAAAIRRCRRKLH. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08225 392 MobiDBLite consensus disorder prediction 1 26 - -
Seca8g08225 392 MobiDBLite consensus disorder prediction 27 41 - -
Seca8g08225 392 MobiDBLite consensus disorder prediction 1 48 - -
Seca8g08225 392 Pfam Nse4 C-terminal 231 315 IPR014854 -
Seca8g08225 392 MobiDBLite consensus disorder prediction 181 213 - -
Seca8g08225 392 Coils Coil 12 49 - -
Seca8g08225 392 PANTHER UNCHARACTERIZED 9 376 IPR027786 GO:0005634|GO:0006281|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08225 Seca-Chr8 179808153 179820242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08225 4 391 Non-SMC Element family AT1G51130 49.492 4.98e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08225 K22825 - gmx:100792117 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08225 8 179808153 179820242 Seca8g08225 8 179808153 179820242 ECH