Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08217 ATGAGTCTTACTATTCTTACCCTTCTGGCACTCTCCTCCTACATCTCTGCCCAGAATGTTAGCATTGATGAGACACTCATTGCAGGTAACAATGATGCTCCATGGCTTTCTCCATCAGGAGATTTTGCATTAGGATTTCATCAACTAGAAAAGAACAACCTTTTCTTGGTCGCCATATGGTACCACAAAATACCTGACAAGACTCTCACATGGTACGCAAATGGAGACAACCCTGCTCCTAAAGGATCCAAACTAGTCCTAAATCAATACAGAGGACTAGTTCTGACAACCCCTCAAGAAGCTGAAATTTGGAGATCACAATCCATATCAGGCACCATTTCCTATGGACTAATGAATGACACTGGCAACTTTCAGCTCTTTGATAAGAATTCACAGGTCTTATGGGACACTTTCAGACTCCCAACTGATACCTTGCTACCAACTCAAATTATGGAGGTCAAAGGCACCCTCTCTTCTCGACAAAAAGAGACCAACTTCTCAAAAGGAAGGTTTCAATTTCGCTTGCTTGAAGATGGTAATGCTGTGCTCAATCCTATAAACTTGCCTACCAACTATACTTATGATGCTTACTACATCAGTGGCACCCGTGATGCTTCCAATGACACAAACTCTGGTTACCGTGTGGTTTTTGATAAATCAGGCTTCTTGTACATACTGAGAAAGAGTGGTGAGAGGTTTGATATCACAAGTCCAAATGATGTGCTTTCAACTGATTCCTACTATTATAGAGCAACCATCCATTATGATGGAGTTTTCACCATATCACATCACCCTAAAAGTCCAAGTGTCAATCAAAGCTGGACAGTGGTGAAGACCTTGCCAGATAACATTTGCATGGATTTGAGAGGAGAAAAGGGTAGTGGGGTGTGTGGATTCAACAGCATCTGCACTCTCAAAACTGATCAGAGACCAATCTGTAGGTGCCCAGAAGGGTACTCTCTTCTTGATTCAACTGATGGGTTTGGTAGCTGTGTACCAAATTTGCAACTTGGTTGTGATGGAAGTGGACAAAGCTCACAAGAAGATCTATACTTCATGAAGGAATTTCCAAATACTGATTGGCCTATATCTGATTATGAAATGTATAGACCTTACAATTTAGAAGATTGTAGGACTGCTTGCTTGCAAGATTGCTTATGTGCTGTTTCTATATTTAGAGGTGATAGCTGCTGGAAGAAGAAGCTTCCTCTCTCAAATGGAAGAGAGGATAGAGCAGTTGGGGGATTTGCTTTCATTAAATTGAGGAAAAACAATGATTCATTAGGAATTCCTCAGACTCCATTCACTGAACAACAGAAGAAATATAGCAAAGATCAAGATACTTTGATAACTGTAATATCAGTCCTTCTAGGTGGATCTGTCTTTGTCAATTTCATGTTGTTCAGTGCAGTGTGTATTGGTTTCTTCTTCTACAACAACAGAAAAAACTCAACCAAGAAAGGTGTTGCAGAGACCAACTTGAGGAGTTTCACCTTTGGGGAGCTTGTGCAAGCAACAAACAACTTCAAAGAAGAATTGGGAAGAGGGTCTTGTGGTGTTGTGTTTAAAGGAATTGTAGATTTGACTACTATTGCAGTCAAGAAATTAGACAAGGTGCTGAAAGAGAGTGATAAGGAATTCAAAACAGAAGTGAATGTGATAGGCCAAACTCATCATAAGAACTTGGTTCGCCTTCTTGGATATTGTGATGAGGGAGAACACAGGATTCTAGTGTATGAGTTCTTGAGCAATGGGACATTAGCAAGCTTCCTTTTTGATGATTTCAAACCAAATTGGAACCAGAGAGTCCAAATTGCATTTGGAATTGCAAGAGGGCTTGTTTACTTGCATGAGGAATGCTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAACATACTTCTTGATGAGTATTACAATGCAAGAATATCAGATTTTGGGTTAGCAAAGCTACTGAGGATTAACCAAAGCCACACAGAAACTGGTATTAGAGGAACAAAAGGTTATGTTGCACCAGACTGGTTCAGGAGTGCACCAATCACTGTCAAGGTTGATGTTTACAGCTTTGGTGTGCTACTTCTGGAGATCATTTGCTGTAGAAGAAATGTAGATTCTGACATTGGGGATGAAGAGAAGATCATTTTAACTGATTGGGCTTATGACTGCTATAAGGCTGGAAGAATTGACATGTTGGTTGATAATGATGATGAAGCTATCAATGACATGAAGAAGTTGGAAAGGTTTGTGATGGTAGCTATTTGGTGTCTTCAGGAAGATCCCTCTCTCAGGCCAACCATGAAAAAGGTTATGTTGATGTTGGAAGGAATAGCTCCAGTCACAACTCCACCAAGTCCCTGCCCTTTTACTTCTGTTTCTGTTAATTGA 2388 0.4037 MSLTILTLLALSSYISAQNVSIDETLIAGNNDAPWLSPSGDFALGFHQLEKNNLFLVAIWYHKIPDKTLTWYANGDNPAPKGSKLVLNQYRGLVLTTPQEAEIWRSQSISGTISYGLMNDTGNFQLFDKNSQVLWDTFRLPTDTLLPTQIMEVKGTLSSRQKETNFSKGRFQFRLLEDGNAVLNPINLPTNYTYDAYYISGTRDASNDTNSGYRVVFDKSGFLYILRKSGERFDITSPNDVLSTDSYYYRATIHYDGVFTISHHPKSPSVNQSWTVVKTLPDNICMDLRGEKGSGVCGFNSICTLKTDQRPICRCPEGYSLLDSTDGFGSCVPNLQLGCDGSGQSSQEDLYFMKEFPNTDWPISDYEMYRPYNLEDCRTACLQDCLCAVSIFRGDSCWKKKLPLSNGREDRAVGGFAFIKLRKNNDSLGIPQTPFTEQQKKYSKDQDTLITVISVLLGGSVFVNFMLFSAVCIGFFFYNNRKNSTKKGVAETNLRSFTFGELVQATNNFKEELGRGSCGVVFKGIVDLTTIAVKKLDKVLKESDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFLSNGTLASFLFDDFKPNWNQRVQIAFGIARGLVYLHEECCTQIIHCDIKPQNILLDEYYNARISDFGLAKLLRINQSHTETGIRGTKGYVAPDWFRSAPITVKVDVYSFGVLLLEIICCRRNVDSDIGDEEKIILTDWAYDCYKAGRIDMLVDNDDEAINDMKKLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTTPPSPCPFTSVSVN. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08217 795 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 26 787 - -
Seca8g08217 795 CDD STKc_IRAK 513 777 - -
Seca8g08217 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 15 139 - -
Seca8g08217 795 Gene3D Transferase(Phosphotransferase) domain 1 582 782 - -
Seca8g08217 795 Pfam D-mannose binding lectin 68 154 IPR001480 -
Seca8g08217 795 PIRSF SRK 1 795 IPR024171 GO:0004674
Seca8g08217 795 SMART serkin_6 507 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08217 795 Pfam Protein kinase domain 509 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08217 795 SUPERFAMILY Protein kinase-like (PK-like) 483 775 IPR011009 -
Seca8g08217 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 189 IPR036426 -
Seca8g08217 795 Gene3D - 140 271 IPR036426 -
Seca8g08217 795 ProSiteProfiles Protein kinase domain profile. 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08217 795 Gene3D - 19 138 IPR036426 -
Seca8g08217 795 Gene3D Phosphorylase Kinase; domain 1 474 581 - -
Seca8g08217 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Seca8g08217 795 SMART blect_4 25 141 IPR001480 -
Seca8g08217 795 FunFam S-receptor-like serine/threonine-protein kinase 478 581 - -
Seca8g08217 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 782 - -
Seca8g08217 795 ProSiteProfiles Bulb-type lectin domain profile. 11 139 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08217 Seca-Chr8 179750594 179752981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08217 489 776 Receptor kinase-like Gene Family AT1G60800 43.919 1.24e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca8g08217 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08217 - - gmx:100811299 1260.74