Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08204 ATGCGTCGGTGGCTGTGTTGCACCTGTCAGGTGGAAGAATCTTACCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACTCAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGGCACCACCACCTATTGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGATCAAAGGCATTGATTGGCGAAGGATCATATGGAAGGGTGTATTATGCAACCTTAAACGATGGAAAAGCTGTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCTGAATCAAATAATGAGTTTTTGACCCAGGCATTGTTCCCTATTCAGGTTTCCATGGTCTCAAGATTGAAGAATGATAATTTTGTTGAGTTGCAAGGTTACTGTGTTGAAGGAAATCTTCGTGTTCTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGTCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGACGCAGCAAGGGGATTAGAATATTTGCATGAGAAAGTTCAACCACCAATTATACACAGAGATATCAGATCAAGTAATGTGCTTATCTTTGAAGATTACAAGGCAAAGATAGCTGATTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTGTTGGGAACTTTTGGGTATCATGCTCCAGAATATGCCATGACTGGCCAGTTGACTCAAAAAAGTGATGTCTACAGTTTCGGGGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCAAGAGGACAGCAAAGTCTTGTTACATGGGCTACCCCAAGATTAAGCGAAGATAAAGTGAAACAATGCGTGGACCCAAAACTGAAAGGAGAATATCCCCCAAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGTGTGCAATATGAAGCAGAGTTTAGGCCAAATATGAGCATTGTTGTCAAAGCACTGCAACCACTTCTGAAGTCTCCTGCTCCTGCACCAGAAAGCTGA 1107 0.4291 MRRWLCCTCQVEESYPSNENEHLKSPRNYGDGNSKGSKVSAPVKPETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGKAVAVKKLDVSSEPESNNEFLTQALFPIQVSMVSRLKNDNFVELQGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAPAPES. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08204 368 Gene3D Transferase(Phosphotransferase) domain 1 155 364 - -
Seca8g08204 368 Gene3D Phosphorylase Kinase; domain 1 37 153 - -
Seca8g08204 368 Pfam Protein tyrosine and serine/threonine kinase 76 355 IPR001245 GO:0004672|GO:0006468
Seca8g08204 368 ProSiteProfiles Protein kinase domain profile. 71 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08204 368 SUPERFAMILY Protein kinase-like (PK-like) 51 355 IPR011009 -
Seca8g08204 368 ProSitePatterns Tyrosine protein kinases specific active-site signature. 205 217 IPR008266 GO:0004672|GO:0006468
Seca8g08204 368 PIRSF ILK 13 363 - -
Seca8g08204 368 MobiDBLite consensus disorder prediction 14 54 - -
Seca8g08204 368 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Seca8g08204 368 FunFam PTI1-like tyrosine-protein kinase 3 33 153 - -
Seca8g08204 368 SMART tyrkin_6 71 355 IPR020635 GO:0004713|GO:0006468
Seca8g08204 368 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 363 - -
Seca8g08204 368 FunFam PTI1-like tyrosine-protein kinase 3 155 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08204 Seca-Chr8 179491660 179496461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08204 5 356 Receptor kinase-like Gene Family AT4G02010 45.915 3.66e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca8g08204 PK_Tyr_Ser-Thr 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08204 K13436 - gmx:548003 696.041