Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08186 ATGATATCAGCTACAATTAGGCGAATTGTGTCACCCTGTTGGAGACCATCTGATGAGGGTGAAAATTCTTGTAGAAATGGGGATGCAAGTGGACGTTATAATGGTTTGTTGTGGTATAAAGATTATGGAAGACATGCCAATGGTGAATTCTCAATGGCAGTTGTTCAAGCAAACAATTTGTTGGAGGATCAAAGCCAACTTGAATCAGGCCCCATAAGCTCACATGCAGGAAGTCCTCAAGGAACTTTTGTTGGTATATATGATGGGCATGGAGGTCCAGAAGCTTCCCGGTTTGTCAATGACCACCTATTTAAAAATATCAAGAAATTCACTTCAGAAAATCAAGGAATGTCAGCTGATGTTATCAACAAAGCATTCTTGGGAACAGAAGAAGAGTTCCTTTCTCTTGTAAAGAAGCAGTGGCTACACAAGCCTCAGATTGCGTCGGTTGGATCTTGCTGTTTGATAGGCATAATATATAGCGGGGAGCTCTATATTGCTAATGCAGGAGACTCTCGAGCTGTGTTAGGTAGAATGGATGAGGCTACGAAAGAGGTTAAAGCAATTCAACTATCCTCTGAGCATAATGCTAGCCTGGAATCTGTCAGAGAAGAGTTGCGCTCATTGCATCCTGATGATCCGCAGATTGTAGTGATGAAGCACAAAGTCTGGCGAGTGAAGGGTCTGATTCAGGTGACTTTGTTAAAGCTTAATCTCAAGTTTCATTTTCTCTTTTTATGTATGGTAGCAGGTTTTGGCATCTGGATTGAGTTTGAGTATAAGATTCATGGGACAATGGTTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAACAAAGCACCACTATTGGCCAAGTTTCGACTCTCAGAACCCTTTGAGCAGCCAATCCTTAAAGCTGAACCAACAGTACTAGTACAGAAACTCCGTCCTCAAGATCATTTTCTTATATTTGCATCAGATGGGTTATGGGAGCATGTGAGCAATCAAGAAGCAGTTGACATTGTTCATAACTATCCACGTAATGGAGTAGCGAAGAAACTTATCAAAACTGCACTATGTGCAGCTGCAAAGAAAAGAGAGATGAGATTCTCAGACTTGAAAAAGATTGATCGTGGGGTGAGGAGACATTTCCATGATGACATCACGGTTATTGTTTTGTATCTTGATTCACATTTAATTAGCCGTTGTTATTCTCGTTGTCCAACCGTTTCCATCAAAGGAGGTGGTGATTTTGGTATTCTGTAA 1257 0.4097 MISATIRRIVSPCWRPSDEGENSCRNGDASGRYNGLLWYKDYGRHANGEFSMAVVQANNLLEDQSQLESGPISSHAGSPQGTFVGIYDGHGGPEASRFVNDHLFKNIKKFTSENQGMSADVINKAFLGTEEEFLSLVKKQWLHKPQIASVGSCCLIGIIYSGELYIANAGDSRAVLGRMDEATKEVKAIQLSSEHNASLESVREELRSLHPDDPQIVVMKHKVWRVKGLIQVTLLKLNLKFHFLFLCMVAGFGIWIEFEYKIHGTMVSRSIGDAYLKKAEFNKAPLLAKFRLSEPFEQPILKAEPTVLVQKLRPQDHFLIFASDGLWEHVSNQEAVDIVHNYPRNGVAKKLIKTALCAAAKKREMRFSDLKKIDRGVRRHFHDDITVIVLYLDSHLISRCYSRCPTVSIKGGGDFGIL. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08186 418 Pfam Protein phosphatase 2C 71 361 IPR001932 -
Seca8g08186 418 ProSiteProfiles PPM-type phosphatase domain profile. 49 392 IPR001932 -
Seca8g08186 418 SMART PP2C_4 43 390 IPR001932 -
Seca8g08186 418 SUPERFAMILY PP2C-like 76 393 IPR036457 -
Seca8g08186 418 CDD PP2Cc 50 392 IPR001932 -
Seca8g08186 418 Gene3D - 39 401 IPR036457 -
Seca8g08186 418 PANTHER PROTEIN PHOSPHATASE 34 390 IPR015655 GO:0004722|GO:0006470
Seca8g08186 418 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08186 Seca-Chr8 179251122 179254941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08186 3 416 PP2C-type Phosphatase Gene Family AT3G12620 69.157 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08186 K01102 - gmx:100807559 628.246