Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08183 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGTGCTGCGGCGGTAGGCCAGAAAGACTCGGAACCGGCGAAGAGGAACGTGAAGACTCGTGCTGCAGTCCCGGCAGCAGAGAAAGGGAGGCCAAGGACTAGATTGGCGGCGAAGAAATTGGAGCGTGAGAAGCCTCCGATCCCGACACCGGAACCTGTTAGTGATAAAGAACGCGCAAAGAACAAGAAAGAAGGTGCAGGCGTGATGGGTGATGAAAGTGGTGGGTTGAGTGCTAATAAGGGTGCTTCACCAGAGGAAGATGCGAACACCCCACCTTTTCCAGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAGGTAGAGAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGTCGTCGCGAGCGTGCTTCAGGCCCTGGAGCCATGGAGCTATCCGTCATATCTCAGGTTGCTCTTAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTCGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCAATAATGTTTAGGATGTCTGCTGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTTGAAAAGATGCATTCAAGAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTGGGTCAGCCAGCTACACCGCAAGAGAAGAAACTATTTCTTGTTGACCTTGGGTTAGCAACAAAGTGGAAAGACTCCTCCACTGGACTGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCGTACACACTGATCTTCCTTCATAAAGGCCGATTACCATGGCAGGGTTATCAGGGTGATTCCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATTCTGTGCTGCTTTTGCCCTGCTCCTTTTAAGCAATTCCTTGAGTATGTCGTCAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATTTCCTTGTTTGATGGTGTGATCGGACCCAATCCAGCATTGCGGCCAATTAATACTGATGGTGCTCAAAAGAAAATTTGTCAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGATTAGGGGTTCCTGCTACGCAATGGATTTCAGTTTACAATGCTAGACTGCCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTATCCCAGCATGTTGATAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGTCTTCCTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTATCGCCTTTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGATAAGAACTATTACATTACTTCTATTGCAGGGGCCAACAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACTCAACAATCATACAAAGTAAGTGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCAGGTCACATCAATGGCTACTGCTGGAAGTCGCTGGGGTATTGTTATGTCTCGCAATGCCGGATTTAGTAATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAGACGTTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTGTATTAAGTATTCCGAGGCGCAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCACACATGTTAAGGAAAAATGGGCAAAAAACCTTTATCTTGCCTGTTTGTGTTATGGGCGCACCGTATGCTGA 2055 0.4472 MPELRSGVRRGRAAAVGQKDSEPAKRNVKTRAAVPAAEKGRPRTRLAAKKLEREKPPIPTPEPVSDKERAKNKKEGAGVMGDESGGLSANKGASPEEDANTPPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRERASGPGAMELSVISQVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSIMFRMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWKDSSTGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPEILCCFCPAPFKQFLEYVVNMKFDEEPNYSKLISLFDGVIGPNPALRPINTDGAQKKICQVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLSQHVDRGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFQVTSMATAGSRWGIVMSRNAGFSNQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALVLSIPRRRPGDETQETLRTSQFPSTHVKEKWAKNLYLACLCYGRTVC. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08183 684 FunFam casein kinase 1-like protein HD16 89 440 - -
Seca8g08183 684 ProSitePatterns Protein kinases ATP-binding region signature. 122 155 IPR017441 GO:0005524
Seca8g08183 684 MobiDBLite consensus disorder prediction 36 78 - -
Seca8g08183 684 MobiDBLite consensus disorder prediction 1 110 - -
Seca8g08183 684 ProSiteProfiles Protein kinase domain profile. 116 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08183 684 Pfam Protein kinase domain 116 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08183 684 Gene3D Transferase(Phosphotransferase) domain 1 89 441 - -
Seca8g08183 684 SMART serkin_6 116 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08183 684 PANTHER CASEIN KINASE-RELATED 116 646 - -
Seca8g08183 684 CDD STKc_CK1 116 393 - -
Seca8g08183 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Seca8g08183 684 SUPERFAMILY Protein kinase-like (PK-like) 116 403 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08183 Seca-Chr8 179219173 179224920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08183 83 351 AGC Kinase Gene Family AT3G08720 21.691 5.01e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca8g08183 Pkinase 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08183 - - gmx:100819969 1180.62