Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08182 ATGGCGTCGACATCTTGTGTCAGTAAGAGCCCATTACCCATGACAGAGGCAGCTTCCAGCTCTAGTGTATATCCTCCTCCTGTAGCAAAATATGAAGAGGTTGTATCCAATTCCAAGCTCTTCATGTTTACCTTGGAGAAACTCCACGCTGCTATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGGAAAAATAATTAGAGAAAGAAAATGGAAAGACGTAACTTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTATTATGCTTCATTGCTCTTCCATTATGAACAGATTTACTTTTTTAAAGCCCGTGAATGGAACCCTAACACTTCTGATGCTTTGCAGAGTCAATCAGCCATGCAAGTTCCTGTTCCAAAGATGCAGATTTTGCAGCCTTCACCAGAAATTCAACCAGCTGTCTCTCAACAGTCAAATGTTAATGCTACTAAATTGCCTGAAGGTTTTTGCTTTTTTCCAGCCCAAAATAAGATTAGTCATAAATCACAAAGAAAAAGGAAAAGAAAGTTGTCGTTACAGTCATGA 621 0.3994 MASTSCVSKSPLPMTEAASSSSVYPPPVAKYEEVVSNSKLFMFTLEKLHAAMGTKFMIPIIGGRELDLHRLFVEVTSRGGIGKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLFHYEQIYFFKAREWNPNTSDALQSQSAMQVPVPKMQILQPSPEIQPAVSQQSNVNATKLPEGFCFFPAQNKISHKSQRKRKRKLSLQS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08182 206 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Seca8g08182 206 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Seca8g08182 206 SMART bright_3 36 127 IPR001606 GO:0003677
Seca8g08182 206 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g08182 206 FunFam High mobility group B protein 15 29 143 - -
Seca8g08182 206 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Seca8g08182 206 SMART ARID_2 32 122 - -
Seca8g08182 206 Gene3D - 28 144 IPR036431 GO:0003677
Seca8g08182 206 SUPERFAMILY ARID-like 33 131 IPR036431 GO:0003677
Seca8g08182 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 173 - -
Seca8g08182 206 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08182 Seca-Chr8 179201870 179205390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08182 1 163 ARID Transcription Factor Family AT1G04880 55.215 1.88e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca8g08182 ARID 5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08182 - - gmx:100783284 282.722