Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08181 ATGGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACCGTCACAATAGGCACGGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAAAACCCTGTATTGCCAGCATCCCATCACAGTGGTTTGGCTAGTAACAACAATGCGTCTACTTCATTGGGTGTCCATCGTCGCCGACGCAGGAAGAAATCCGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCACGCAAGGCTAAAGCCACTTCACCAAGGAAAGGACAGGGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCGGAAAAGGCAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGATATAGAGCGGAAATGGAGGATTATCGCGAGAAACTGAAGATGGGCCAAGTTATCAGTGATGCTGTCCCACTTCAACAACGACTTCCTGACCCAGTAAAATTGGATGAAGTTGAGGGGGATTCTCTTCAAACTCCAGAGGAGAGCAGTTCTGGTGAAAGTGACTATGAAGATGATAAAGCTATGGAGAAAGATTTTGATATGGATGCATTGCCTGTTATGGGGGTGGGTGCGGAAACTAGCTGTTTGGGTTCAGAAGAGAAGTCATCCAAGGAGGGTTTATGA 681 0.4405 MGVIDGKFESGYLVTVTIGTEKLKGVLYQAPQNPVLPASHHSGLASNNNASTSLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRMIGELWNKLKESEKAVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPDPVKLDEVEGDSLQTPEESSSGESDYEDDKAMEKDFDMDALPVMGVGAETSCLGSEEKSSKEGL. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08181 226 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 192 - -
Seca8g08181 226 MobiDBLite consensus disorder prediction 155 226 - -
Seca8g08181 226 MobiDBLite consensus disorder prediction 38 82 - -
Seca8g08181 226 Coils Coil 124 144 - -
Seca8g08181 226 PRINTS High mobility group (HMG1/HMG2) protein signature 126 146 - -
Seca8g08181 226 PRINTS High mobility group (HMG1/HMG2) protein signature 107 126 - -
Seca8g08181 226 MobiDBLite consensus disorder prediction 38 54 - -
Seca8g08181 226 Pfam HMG (high mobility group) box 75 142 IPR009071 -
Seca8g08181 226 SMART hmgende2 74 143 IPR009071 -
Seca8g08181 226 MobiDBLite consensus disorder prediction 55 69 - -
Seca8g08181 226 FunFam High mobility group B protein 15 57 152 - -
Seca8g08181 226 Gene3D High mobility group box domain 59 154 IPR036910 -
Seca8g08181 226 CDD HMG-box_AtHMGB9-like 75 141 - -
Seca8g08181 226 SUPERFAMILY HMG-box 63 146 IPR036910 -
Seca8g08181 226 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 75 142 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08181 Seca-Chr8 179200055 179200898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08181 1 173 ARID Transcription Factor Family AT1G04880 71.585 9.55e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca8g08181 HMG_box 7.5e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08181 - - gmx:100807028 373.629