Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08179 ATGAGTTCGTCGAGGACAGTGAGGAAGCTACAGGTTGTGTCACCTGTTCCAGCTGACATAGACATTGCTAACTCCGTTGAACCTGTTCATATCTCTGAGATTGCCAACGACCTCAATCTCAATCCCCATCACTATGATCTTTACGGAAAATATAAGGCTAAGGTTTTGTTGTCCGCTCTTGATGATCTGCAAGGATCAGAAGATGGGTATTATGTTGTGGTTGGAGGCATTACTCCAACTCCTCTTGGAGAAGGCAAATCTACTACTACAGTGGGGCTTTGTCAAGCTTTGGGTGCTTTTCTTGATAAAAAGGTGGTCACCTGCCTTCGTCAACCATCACAAGGACCTACTTTTGGAATCAAAGGAGGTGCAGCTGGTGGAGGTTATAGCCAAGTGATTCCCATGGATGAATTCAATCTTCACCTAACAGGAGATATCCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGGATTTTCCATGAGTCAACGCAGTCAGATAAGGCTCTTTTTAACCGGTTATGCCCTCCAAATAAAGAAGGAAAAAGGAGCTTTAGTGATGTCATGTTTAGGCGTCTTAAGAAGCTTGGTATTTCAAAGATCAATCCAGACGATCTTACACAAGAAGAAGTAAATAAATTTGCTAGGCTTGATATTAACCCAGATTCTATTACATGGAGGAGAGTAATGGACATCAATGACCGATTCTTAAGAAAAATTACTATTGGCCAGGGACCTGACGAGAAGGGAATGGTAAGAGAAACAGGATTTGATATTTCAGTTGCTAGTGAGATAATGGCTGTTTTGGCACTGACAACATCCTTAGCTGATATGCGAGAGAGGCTAGGGAAAATGGTTATTGGAAATAGCAAGAGTGGTGACCCTGTAACTGCTGATGATCTAGGTGTTGGAGGTGCTTTAACGGTTTTAATGAAGGATGCCATTCACCCTACCCTTATGCAGACTTTGGAAGGAACCCCTGTTCTTGTTCATGCAGGTCCATTTGCAAATATTGCTCATGGAAATTCTTCTATTGTGGCTGATAAGATTGCACTAAAGTTGGTGGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGAGCTGAAAAGTTTATGAACATCAAGTGTAGATATAGTGGTTTGACACCTCAATGTGCAATTATTGTGGCAACAATAAGAGCACTAAAAATGCATGGTGGAGGGCCAGGAGTTGTTGCTGGAAAACCTCTTGACCATGCATATTTGACTGAAAATGTTGCTCTGGTTGAGGCTGGTTGTGTGAATATGGCACGGCATATATTGAATACAAAAGCTTACGGTGTGAATGTTGTAGTTGCTATCAACAAGTTTTCAACTGACACTGAAGCTGAGCTAAATGCGGTTAAAAATGCTGCCTTAGCTGCTGGAGCTTATGATGCTGTAATTTGTACCCATCATGCCCATGGTGGCAAAGGAGCAGTTGACCTGGGCATTGCAGTTCAAAAAGCTTGTGAGAATGTGGCACAACCATTGAAGTTCCTATATCCACTGGATCTGGGTATAAAGGAGAAAATAGAAGCAATAGCAAAGTCATATGGAGCCAGTGGCGTTGAGTACTCAGAGCAGGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATCTGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCGAAGGGAGCTCCAAGTGGGTTTATCTTACCAATAAGGGATGTAAGAGCTAGTATAGGAGCTGGATTTATTTATCCTTTAGTTGGAACAATGAGTACGATGCCAGGGCTTCCAACAAGGCCATGCTTCTATGATATTGATCTTGATACAACAACCGGAAAAGTCATTGGTCTCTCTTAA 1911 0.4239 MSSSRTVRKLQVVSPVPADIDIANSVEPVHISEIANDLNLNPHHYDLYGKYKAKVLLSALDDLQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLKKLGISKINPDDLTQEEVNKFARLDINPDSITWRRVMDINDRFLRKITIGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGDPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAIIVATIRALKMHGGGPGVVAGKPLDHAYLTENVALVEAGCVNMARHILNTKAYGVNVVVAINKFSTDTEAELNAVKNAALAAGAYDAVICTHHAHGGKGAVDLGIAVQKACENVAQPLKFLYPLDLGIKEKIEAIAKSYGASGVEYSEQAEKQIEMYSKQGFSGLPICMAKTQYSFSDNAAAKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTTTGKVIGLS. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08179 636 ProSitePatterns Formate--tetrahydrofolate ligase signature 1. 119 129 IPR020628 GO:0005524
Seca8g08179 636 Pfam Formate--tetrahydrofolate ligase 18 636 IPR000559 GO:0004329|GO:0005524
Seca8g08179 636 Gene3D - 167 232 - -
Seca8g08179 636 Gene3D - 271 522 IPR027417 -
Seca8g08179 636 Gene3D - 15 166 IPR027417 -
Seca8g08179 636 FunFam C-1-tetrahydrofolate synthase, cytoplasmic 17 175 - -
Seca8g08179 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 632 IPR027417 -
Seca8g08179 636 FunFam C-1-tetrahydrofolate synthase, cytoplasmic isoform X2 250 522 - -
Seca8g08179 636 Gene3D Formyltetrahydrofolate synthetase, domain 3 523 611 - -
Seca8g08179 636 FunFam Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 167 232 - -
Seca8g08179 636 ProSitePatterns Formate--tetrahydrofolate ligase signature 2. 399 410 IPR020628 GO:0005524
Seca8g08179 636 CDD FTHFS 31 635 IPR000559 GO:0004329|GO:0005524
Seca8g08179 636 Hamap Formate--tetrahydrofolate ligase [fhs]. 16 636 IPR000559 GO:0004329|GO:0005524
Seca8g08179 636 FunFam Putative formate--tetrahydrofolate ligase 523 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08179 Seca-Chr8 179187542 179192665 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08179 K01938 - gmx:100806844 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08179 8 179187542 179192665 Seca8g08179 8 179187542 179192665 ECH
Seca8g08179 8 179187542 179192665 Seca4g09945 4 232370761 232374180 ECH