Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08163 ATGGCCAACCCCACCCACAATGTTCTTCCTGCAACGCTTGATCATAGAAAAGGGACATGTCACACCACCAACCCACTCCCATCTACTACTCAATTTCACACTCCCAGTTATCTTTCTCGCTATAATCAAATTATCAATGAAAAAGCTCAACCTGTCCAACTCATACCCTCATCACCAACTACCAGAGCCAGATCTCAAGAGAAAAATAAATCAAAGGAATCAGTGATTCAACATCTCCTCCTATCACCCCCTCCTCATCTGAACCACGTTGGTGTGTGTGTGAATGCCGCAGAAACATCAATTTCAAGAGAGTTTAATATCAATCCTAATCATGATAATCCTAATCCTAATCATGATAACAATAACATCAACAAGGAAGGAGATGACACCTCCAATCCTACCGGGCAGGGCGCCACTGACATATTGGGGAGACCGACAGAAGCCCAACCTAGAGGATTAATGGACAGACCTAAGCCGCAAGCAGTTTTACCTAGTCACGGCCACTCGACTAGCTCTTGGGCGCCAGGGGGTGCCCCAGCCCGGGAGGGATGTCCACCAAGTGAGATTTTGAATGGCTTCGGGGAGATTCGAACCCATGTCCATGAGGAGACAAAGGGACAAGAAGAACCTACTATTACAAATACCCCATCAGCTTCAACTTTGCGAAACATGAATGAGATCGGGCGGAAAGGAAACAATCACCAGCGTGGAAGAAGTGGTGAGAAGAAGGATGGAAATTATGATGGTCGAATTCACAGCATTCGATATAAGAAGAATGGACCATACACATGCTCAGAGTGCTACCAACAGTTCCCTACCTCACAAAAATTTGCGGCTCATGTGAATGGTAGTCACTACAAGCATGAAACAAAAACTCAGAAAAGGAAGAGACTTTTGGCCAGAAACCAACGCAGAAATCTCCGCCTTCAAAAGGTAAATGGTGAGATCACTTTTGTTCCTGTTTCTAATTCTGAGGCTGCACCTGTAAATGTTACTCAAGGTGGAGAAGAAGGACATCCACATGCTGCTACTGTTACAAGGGTCAAAGTTGAAGATGGTGGTGACCTTCAGGGTCAGGTTGCTCTTCCTGCAGAAAAGGAAACTCTTGGCAAAGGCATAACTGAGGGGGTCAACATCAAATTGGAGCGTGCTGATGCATAA 1161 0.4548 MANPTHNVLPATLDHRKGTCHTTNPLPSTTQFHTPSYLSRYNQIINEKAQPVQLIPSSPTTRARSQEKNKSKESVIQHLLLSPPPHLNHVGVCVNAAETSISREFNINPNHDNPNPNHDNNNINKEGDDTSNPTGQGATDILGRPTEAQPRGLMDRPKPQAVLPSHGHSTSSWAPGGAPAREGCPPSEILNGFGEIRTHVHEETKGQEEPTITNTPSASTLRNMNEIGRKGNNHQRGRSGEKKDGNYDGRIHSIRYKKNGPYTCSECYQQFPTSQKFAAHVNGSHYKHETKTQKRKRLLARNQRRNLRLQKVNGEITFVPVSNSEAAPVNVTQGGEEGHPHAATVTRVKVEDGGDLQGQVALPAEKETLGKGITEGVNIKLERADA. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08163 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Seca8g08163 386 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Seca8g08163 386 MobiDBLite consensus disorder prediction 105 187 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 105 139 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 50 71 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 50 64 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 209 228 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 229 248 - -
Seca8g08163 386 MobiDBLite consensus disorder prediction 201 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08163 Seca-Chr8 179060785 179062143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08163 244 315 C2H2 Transcription Factor Family AT2G18490 56.164 1.61e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g08163 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08163 - - gmx:100788426 107.457