Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08160 ATGATTCGTCAAAGTTCAGTTTATCAAGAAACTATTAACCAGAAGTCTCAAATTGAAAAGGACTTTTTGACAATCAGGCCCGTTCTTCAATCTTTCTATCAATGTTTTGGAGATTTTACTTACAAGGACTTCATGCATGCATGTACACTAGTTGGTTCTCGAGCATGGGAAAGCACTAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGGGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAGTTACTGCTGATCGTGACTATGCTCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGTTTTACAATTCCATATAACATTTATGATCAGGTTCAAATCCAGTTTGATATACCTAAGCATGATCCTCTGCATGCCTTGAAATTGGAACTCTTACAGCAGTACTTTGTGCCTCCAACCGATGATATGAAGGGTTTGAAGTATTCTGTGAATACCTTCACAATCAAGTTTGCACTGATTCCTAATTTATTTGTCTTGCAGACTTATTTAGATAATATAGTCTGA 585 0.3641 MIRQSSVYQETINQKSQIEKDFLTIRPVLQSFYQCFGDFTYKDFMHACTLVGSRAWESTKGLSLIPFADFLNHDGVSEAIVMSDDDKQCSEVTADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHALKLELLQQYFVPPTDDMKGLKYSVNTFTIKFALIPNLFVLQTYLDNIV. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08160 194 Gene3D - 125 182 IPR036464 -
Seca8g08160 194 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 158 - -
Seca8g08160 194 Pfam SET domain 12 109 IPR001214 GO:0005515
Seca8g08160 194 Gene3D set domain protein methyltransferase, domain 1 1 122 - -
Seca8g08160 194 SUPERFAMILY SET domain 5 127 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08160 Seca-Chr8 179046226 179052751 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g08160 SET 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08160 K19199 - gmx:100818002 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08160 8 179046226 179052751 Seca8g08160 8 179046226 179052751 ECH