Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08155 ATGTCATCTCGCATTGTAGCGGAGAATGTCACTGATACGACGTCGTATTTGGACCTAATGGAACTTAACGACCTCTCGCGCCGTCCCGGCGCCGGTGAGATGCCGACTCTCGGTCAGCTCCTTAAGCACGTCGGAGACGTACGGAAAGAAGCTGCCGGTGACGGCAGCGAGACGCCGGTGCACCAAGCGCTCGACATCGTCGGAATTGAGCCTCGTTCGCTGCCATTCGTCCTTTCCTTCAGCAACCTCACCTACAGCGTTAAGGTCCGCCGGAAAATGAGCTTCTCCTCCATCTTCCCCCGCCGCCAAAGCCGACTCGGCGCGGCGGCGGTTGCGGAGGCGCCGGCGATCGGGGAGAGCATGTTCAGTCGGACCAAGACTCTGCTGAACGACATCTCCGGCGAAGCACGCGACGGCGAGATCATGGCGGTCCTCGGCGCCAGCGGTTCTGGAAAATCAACTCTGATCGACGCGCTGGCGAACCGAATCGCAAAAGGAAGGCTAAAAGGAAGAGTGGCGCTGAACGGCGAAGCCTTAGAGTCACGGCTGTTGAAGGTGATATCTGCATACGTGATGCAAGACGACCTCCTCTTCCCAATGCTCACCGTGGAAGAGACTCTGAACTTCGCCGCTGAGTTCCGATTGCCTCGCACGCTCTCCAAATCAAAGAAAAAGGCTCGCGTCCAAGCTCTAATCGACCAGCTCGGGCTCCGCAACGCCGCGAAAACCGTCATCGGAGACGAAGGCCACCGCGGAGTCTCCGGCGGTGAACGCCGGCGAGTTTCGATCGGCATCGACATAATCCACGACCCGATCCTGTTATTCCTGGACGAGCCAACCTCTGGTCTTGACTCCACAAGCGCGTTCATGGTGGTGAAGGTGCTTCAGAGAATCGCACAGAGTGGAAGCATCGTGATCATGTCCGTTCACCAGCCAAGTTACCGAATCCTAGGCCTTCTGGACCGCATGATCTTCTTATCACGCGGCCAAACCGTTTACAGCGGTTCTCCGTTGCAGTTACCGTTGTTCTTCGCGGAGTTCGGTCACCCGATACCGGAGAGTGATAACCGGACGGAGTTCGCGTTGGACCTGATTCGCGAGCTTGAAGGTTCTCCCGGAGGAACAAAAAGCTTGGTGGAGTTCAACAAGTCATGGCAGAGCATGACGAAACTTCACCCTGTGGATGCTTCTGAACAACGAAACGGCATGTCGTTGAAGGAAGCAATTAGCGCGAGCATTTCGAGAGGGAAATTGGTGTCTGGCGCAACAAACACCAATACGAACCCGTCGTCTATGGTGCCGACGTTTGCGAATCCGTTTTGGATTGAGATGGCGACGCTGTCGAAACGCTCGTTCACGAATTCAAGGAGAATGCCAGAGCTGTTTGGGATAAGGTTGGGTGCGGTTATGGTCACTGGGTTCATTCTTGCTACAATGTTTTGGCAATTGGATAACTCACCCAAAGGAGTGCAAGAGAGGCTTGGATTTTTCGCATTTGCAATGTCCACAACGTTCTATACCACTGCGGATGCACTCCCTGTTTTCCTCCAAGAACGTTACATTTTCATGAGAGAAACTGCTTACAACGCTTATCGAAGATCCTCATATCTCGTTTCACATGCTCTTGTTGCGTTACCTTCTCTGGTGTTCCTCTCGCTTGCTTTCGCTGCGACGACGTTTTGGGCTGTGGGGCTTGACGGTGGAGTCTCTGGGTTCTTATTTTACTTCCTAATTATCTTTGCTTCCTTTTGGGCTGGGAACTCCTTTGTGACGTTCCTTTCTGGTGTTGTGCCTCATGTGATGTTGGGTTACACCATTGTGGTTGCTATTCTTGCTTATTTCTTGCTATTCAGTGGGTTCTTTATCAACAGGGATAGGATCCCCAGTTATTGGATTTGGTTCCATTACTTGTCGTTGGTTAAGTATCCTTATGAAGCTGTTCTGCAGAACGAGTTTGATGACCCAGTGAAGTGCTTTGTGAGAGGGGTGCAGATTTTCGACAATACCCCTCTTGGTTCCGTGCCTGGTGCCCTCAAGTTGAAGCTGTTGGAGAGCATGAGCAATACTCTGGGAATGAACATCACGAGCTCCACGTGTTTGACAACGGGTTCTGATATATTGCAACAGAATGGGGTGACGGATTTGAGCAAATGGAACTGTTTGTGGATCACCGTGGCTTGGGGTTTCTTCTTCAGGTTTCTCTTCTACTTGTCTTTGTTGGTGGGCAGCAAGAACAAGAGGAGGTGA 2247 0.5238 MSSRIVAENVTDTTSYLDLMELNDLSRRPGAGEMPTLGQLLKHVGDVRKEAAGDGSETPVHQALDIVGIEPRSLPFVLSFSNLTYSVKVRRKMSFSSIFPRRQSRLGAAAVAEAPAIGESMFSRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGRLKGRVALNGEALESRLLKVISAYVMQDDLLFPMLTVEETLNFAAEFRLPRTLSKSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRMIFLSRGQTVYSGSPLQLPLFFAEFGHPIPESDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHPVDASEQRNGMSLKEAISASISRGKLVSGATNTNTNPSSMVPTFANPFWIEMATLSKRSFTNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRSSYLVSHALVALPSLVFLSLAFAATTFWAVGLDGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPGALKLKLLESMSNTLGMNITSSTCLTTGSDILQQNGVTDLSKWNCLWITVAWGFFFRFLFYLSLLVGSKNKRR. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08155 748 Pfam ABC transporter 129 281 IPR003439 GO:0005524
Seca8g08155 748 SMART AAA_5 138 330 IPR003593 GO:0016887
Seca8g08155 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 112 353 IPR003439 GO:0005524
Seca8g08155 748 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 62 736 - -
Seca8g08155 748 Pfam ABC-2 type transporter 310 387 IPR043926 GO:0140359
Seca8g08155 748 FunFam ABC transporter G family member 6 118 344 - -
Seca8g08155 748 Gene3D - 120 342 IPR027417 -
Seca8g08155 748 Pfam ABC-2 type transporter 446 652 IPR013525 GO:0016020|GO:0140359
Seca8g08155 748 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
Seca8g08155 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08155 Seca-Chr8 178997790 179000036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08155 128 313 Calmodulin-binding Proteins AT2G36910 30.688 3.56e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08155 K05681 - gmx:100803658 1318.91