Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08136 ATGATCTCAAACACAGAGCCTGCAGAAAATGTCACCGCCGCCGGAAATGCCTCCGGCTCTTCTAAAGAAGATCATGTCGCGCCGCCGGCGGCACCAAACATTTTGATGACCTCCAGGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGCTTTCTATCTGGAAGTCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCTTCAATGGAGGATTTCTTTGAGACCAGAATATCAGAGGTTGATGGTCAGATGGTTGCCTTTTTCGGTGTTTTTGATGGACATGGAGGTTCGCGGACTGCAGAATACCTAAAAAATAATTTGTTTAAGAATGTGAGTAGCCATCCTGACTTTATCAAAGACACCAAGACTGCAATTGTTGAAGCATTTAAACAGACAGATGTTGATTACCTCAATGAGGAAAAAGGGCATCAAAGGGATGCTGGGTCCACTGCATCAACAGCCATGTTGTTGGGTGACCGAATTCTTGTTGCAAATGTTGGTGATTCCCGAGTAGTTGCATGCAGAGCTGGTTTAGCTGTTCCTTTGTCTATTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAGGCTGGAGGATTCATAATTTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCACGTGCATTTGGTGACAAACTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAATTGATGGGGTAGATTTTATAATAATCGCTAGTGATGGCCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCATCCAGAGAACTTATTAAAGAAGCTTATGCACGAGGAAGCTCAGACAACATCACTTGTGTTGTTGTTCGATTTGATCTATCCTGA 933 0.4384 MISNTEPAENVTAAGNASGSSKEDHVAPPAAPNILMTSRDHDSLFSGGGISFLSGSRNGRFSYGYSSFKGKRSSMEDFFETRISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNVSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTAMLLGDRILVANVGDSRVVACRAGLAVPLSIDHKPDRSDERQRIEQAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVISNKEAVSLVQNITDAEVASRELIKEAYARGSSDNITCVVVRFDLS. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08136 310 CDD PP2Cc 61 307 IPR001932 -
Seca8g08136 310 SUPERFAMILY PP2C-like 55 308 IPR036457 -
Seca8g08136 310 PANTHER PROTEIN PHOSPHATASE 36 307 IPR015655 GO:0004722|GO:0006470
Seca8g08136 310 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g08136 310 FunFam probable protein phosphatase 2C 59 54 310 - -
Seca8g08136 310 ProSiteProfiles PPM-type phosphatase domain profile. 62 307 IPR001932 -
Seca8g08136 310 Gene3D - 55 309 IPR036457 -
Seca8g08136 310 Pfam Protein phosphatase 2C 63 300 IPR001932 -
Seca8g08136 310 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Seca8g08136 310 SMART PP2C_4 51 305 IPR001932 -
Seca8g08136 310 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08136 Seca-Chr8 178849113 178855287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08136 34 310 PP2C-type Phosphatase Gene Family AT1G43900 74.007 5.43e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08136 K17506 - gmx:100776867 547.354