Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08134 ATGAAACGCTCAGGCGATGACGTGGCTGTAACCGCAACGAAGCCCGTGTTCCTAACCAAAGCCCAGCGCGAGCAGTTGGCCCTTCATCGCCGTCACGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGCTCCTTTCTGGTAACCGCTCTTCTGATCCCAAACCCTCCTCTGAATCCGACCGCCGCGACCGCGACCGAGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGAGACAGGGACAGAGACCGCGACCGTGACCGTGACCGTGACAGGGCCCGCGAAACCGAACGGCGTAACCGAGAGAGGGAGCGCGAAGAAGAGAGTAAGGCTCGCGAGCGTGCTCGGTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGCTCGAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGCGAGAAGTTTCGCTTCTCATTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCTCAGCTTCTGTTCGGGCGAGGGTTCCGCGCGGGGATGGACCGCCGCGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGAGAGCAAATCCGGAAGAAGGACGGCGTGGAGGAGAAGCCGGAGGAGGCGGACGCGCAGCGGCGGAAGGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTAGACCGCCACTGGAGTGAGAAGAAGCTGGAAGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTAAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGTGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTTATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCATCATGATGAAGGAGTCTGAGAAATTTTCTAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTATTCGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTGGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTAGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGAATTGGGCGTACTGGTCGCGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTTAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCCGACAGACCACCTAGACGTAATGACACTGTTTTTGCGCATTAG 2136 0.5094 MKRSGDDVAVTATKPVFLTKAQREQLALHRRHEEIAEQKRRQEQLLSGNRSSDPKPSSESDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRARETERRNREREREEESKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFSKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH. 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08134 711 Gene3D - 522 709 IPR027417 -
Seca8g08134 711 MobiDBLite consensus disorder prediction 28 46 - -
Seca8g08134 711 Pfam Helicase conserved C-terminal domain 541 649 IPR001650 -
Seca8g08134 711 Gene3D - 252 521 IPR027417 -
Seca8g08134 711 MobiDBLite consensus disorder prediction 28 154 - -
Seca8g08134 711 MobiDBLite consensus disorder prediction 55 150 - -
Seca8g08134 711 Pfam DEAD/DEAH box helicase 316 506 IPR011545 GO:0003676|GO:0005524
Seca8g08134 711 FunFam probable ATP-dependent RNA helicase DDX23 252 521 - -
Seca8g08134 711 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 517 IPR014001 -
Seca8g08134 711 SMART ultradead3 310 532 IPR014001 -
Seca8g08134 711 MobiDBLite consensus disorder prediction 686 711 - -
Seca8g08134 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 670 IPR027417 -
Seca8g08134 711 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 291 319 IPR014014 GO:0003724
Seca8g08134 711 MobiDBLite consensus disorder prediction 204 239 - -
Seca8g08134 711 MobiDBLite consensus disorder prediction 679 711 - -
Seca8g08134 711 Coils Coil 95 139 - -
Seca8g08134 711 FunFam probable ATP-dependent RNA helicase DDX23 522 710 - -
Seca8g08134 711 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 688 IPR001650 -
Seca8g08134 711 CDD DEADc_DDX23 302 518 - -
Seca8g08134 711 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 226 688 - -
Seca8g08134 711 SMART helicmild6 568 649 IPR001650 -
Seca8g08134 711 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 446 454 IPR000629 -
Seca8g08134 711 Coils Coil 203 229 - -
Seca8g08134 711 Coils Coil 535 555 - -
Seca8g08134 711 CDD SF2_C_DEAD 529 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08134 Seca-Chr8 178832156 178834291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08134 289 671 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.09e-60 207