Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08133 ATGGCGTCGTTGCTGCCATACGCTGATGTTGATTCCAATTTGAGGTCTTTGGCTGCTCGTGCTGAGGGTTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTCTTCTCTATTCCGTCACCACCCTTGCAGATGATGGTCCCGGGTCCCTTCGTGATGGATGTCGTAAAACGGAGCCACTATGGATTGTTTTTGAAGTTTCAGGTACAATTCACCTTTCCTCATACCTCAGTGTCTCATCTTATAAGACAATTGATGGCAGAGGCCAGAGGATAAAATTGACTGGAAAGGGATTAAGGCTCAAAGAATGTGAGCACATCATTATTTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCAAATTCTAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGTCTTATAGACATTACAAGACAGAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTTGGTGATAGATGCATCCGTGTGACCATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAGCCTCGTCTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGCAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGGCCAAGTCTGGCTCCATATTATCTGAAGGAGATGTGTTTCTGAATGGTGCTGAGCCATGCTTATTAAGAGAAAATAGAGAAGAATCCATGTTCCATCCTAGTGAGTATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGATGTCCTCCAGTTATGTGCAGGCTGGCAGTCCATTTGTAGGCCAGTAGACCATATGGTCCTTAATTAG 999 0.4424 MASLLPYADVDSNLRSLAARAEGFGRHAIGGLHGLLYSVTTLADDGPGSLRDGCRKTEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEAKSGSILSEGDVFLNGAEPCLLRENREESMFHPSEYYPTWTMEAAAHSLRDVLQLCAGWQSICRPVDHMVLN. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08133 332 Pfam Pectate lyase 76 238 IPR002022 -
Seca8g08133 332 PANTHER PECTATE LYASE 18-RELATED 9 287 IPR045032 GO:0030570
Seca8g08133 332 SMART amb_all 32 245 IPR002022 -
Seca8g08133 332 Gene3D - 6 318 IPR012334 -
Seca8g08133 332 SUPERFAMILY Pectin lyase-like 20 328 IPR011050 -
Seca8g08133 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Seca8g08133 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Seca8g08133 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08133 Seca-Chr8 178823257 178825589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08133 42 330 Polysaccharide Lyase AT3G55140 81.661 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08133 K01728 - gmx:100802068 624.009