Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08117 ATGATGGTATCGAGGGGGCTGTTTGGATGGTCCCCACCTCACATACAGCCTCTGACTCCGGTCTCCGAGGTGTCGGAGCCGCCGGAGTCTCCCTCGCCGTACCTTGACGTCGGCGGCGAGACCTCCGCGTCGCAGCAGGTGGAAGTGGAGGAGGAGATTGAGGAGCCCGAGGAGATTGAGCCGCCGCCCGCCGCCGTTCCTTTCTCCCGCCTCTTCGCCTGCGCTGACCGCCTCGACTGGTTTCTTATGGTCGTCGGCTCCGTCGCCGCCGCCGCTCATGGCACCGCTCTCGTCGTTTACTTGCACTACTTTGCCAAGGTTCTCCAGGTTCCTCAGGAGCAGGATCAGTTTCACAGGTTCAAGGAGATTAATCATGAGGAATGTGTCATATTAGATGTCAAATTTAAGTTTCTTGCAGTGCTGATTTTTCTTTCTTGTTTAATAGAGGTTTCTTGTTGGATACTTACTGGAGAACGGCAGACTGCTGTCATCAGATCAGAATATGTTCGAGTATTGCTTAACCAAGATATGAGCTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTGTTGAGTGATGTGCTGCTTATCCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATTCAAGATGCGTATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATAAGAACCTTGTATGCGTTTACAAATGAAACATTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTTTTGGTTATTCATGGAAAGGCTCATGGTGGTGAAATTGTAACAGCTCTGTTTGCTGTCATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAAGGACGAATAGCTGCTTATAGACTATTTGAGATGATAAGCCGGTCATCCTCATCTTCTAATAATGACGGCAGTGCTCCTGCTTCTGTGCAAGGAAACATAGAGTTTCGGAATGTTTATTTCAGTTATCTTTCTCGCCCTGAAATTCCTATCTTGAGTGGGTTTTATCTCACAGTTCCTGCTAAGAAAGCTGTGGCACTTGTCGGCAGAAATGGCTCTGGAAAAAGTAGCATTATTCCCCTCATGGAGCGGTTCTATGATCCAACATTAGGAGAGGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGAAGCCAAATTGGACTGGTCACCCAGGAACCTGCTTTGCTCAGCTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATACCACCACTGATCAAATTGTAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTGGATAAAGGTTATGATACACAGGTTGGCAGGGCTGGTTTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATAGCAAGAGCTGTGCTTCTAAATCCATCCATTCTTCTGCTTGATGAAGTTACCGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTAGATCTCCTTATGCTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCTACAAAACTTCCCAAGAGGATGCCTGTAAGAAACTACAAGGAAACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCATCATCCCCTAGAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTGCGGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTCGGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTTTGGATTCAGTAGATAAAGAGCCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTTCAGTCAGTGCATCGACAAACATCAAATGGTTCTGACCCAGAATCCCCTATTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCTCATTCACAGACTTTTAGCAGACCAGATAGTCATTCTGATGATTTTTCGGGGAAAATAAATGAAAAAAGGGATGTACGCCATCGACAACAACCCTCACTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTGCGTTCAATCCCATCCTTGCTTATGTTATTGGCCTGGTGGTAACTGCTTACTATAGAATTGATGAAAGTCATCACTTACGAGGGGAGATAGACAAGTGGTGCTTGATCATTGCCTGCATGGGTATTGTTACAGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGATGGTTTGATGAAGAGGAGAACAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCGACATTTGTGCGAGCTGCTTTCAGTAACCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCAATTCTCTGCATTTCTGCTGTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACCGAAAAGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAACAAGGTAATGGAACTCTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGTTTTCTTCATGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCGCAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTATAAAAAGAAATTATGTGGATCCACCCACTGCACTCAAGGAGTATATGGTTTTCTCATTTGCTACATTTGCACTCGTGGAGCCCTTTGGGTTGGCTCCGTACATACTCAAGCGACGTAAATCTCTCATTTCAGTGTTTGAAATTATAGACCGTGTGCCAAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCTCGGCCAGAAGTGTTGGTATTAAGCAATTTTAGTCTCAAGGTCAGTGGGGGGCAAACAATTGCTGTTGTGGGAGTTTCGGGGTCAGGAAAGAGCACTATAATATCTTTGATGGAGAGATTTTATGATCCAGTTGCTGGGCAAGTGTTACTAGATGGGAGGGATTTAAAACTATATAATTTAAGGTGGTTGAGGAGCCACCTTGGCCTGGTTCAGCAGGAACCTATCATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCTAGTGAAGCTGAAATGAAAGAGGCCGCAAGAATAGCAAATGCTCATCATTTCATTAGTAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACCTAACACCAGGACAGAAACAGAGAATTGCAATTGCCAGGGTTGTTCTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTCATCGATTGAATCTGAGTCAAGCCGAGTGGTGCAGGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCACACAGGGCTGCTATGATGAGGCATGTGGACAACATAGTTGTTCTTAATGGAGGACGAATAGTGGAGGAGGGGACACATGATTCATTGGTGGCAAAGAATGGTTTGTATGTCCGACTAATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4215 0.4287 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDVGGETSASQQVEVEEEIEEPEEIEPPPAAVPFSRLFACADRLDWFLMVVGSVAAAAHGTALVVYLHYFAKVLQVPQEQDQFHRFKEINHEECVILDVKFKFLAVLIFLSCLIEVSCWILTGERQTAVIRSEYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSSNNDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTTDQIVEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETAAFQIEKDSSESHSFKEPSSPRMMKSPSLQRISAVFRPSDGFFNSQESPKVRSPPPEKMMENGQSLDSVDKEPSIKRQDSFEMRLPELPKIDVQSVHRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPDSHSDDFSGKINEKRDVRHRQQPSLWRLAELSFAEWLYAVLGSIGAAIFGAFNPILAYVIGLVVTAYYRIDESHHLRGEIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAFLIGVLLHWRLALVALATLPILCISAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICIKRNYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV. 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08117 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g08117 1404 Pfam ABC transporter 429 573 IPR003439 GO:0005524
Seca8g08117 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1155 1392 IPR003439 GO:0005524
Seca8g08117 1404 SUPERFAMILY ABC transporter transmembrane region 69 383 IPR036640 GO:0005524|GO:0016020
Seca8g08117 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 642 IPR027417 -
Seca8g08117 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1391 IPR027417 -
Seca8g08117 1404 FunFam ABC transporter B family member 20 1145 1394 - -
Seca8g08117 1404 Pfam ABC transporter transmembrane region 836 1100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g08117 1404 Pfam ABC transporter transmembrane region 86 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g08117 1404 Gene3D - 1145 1399 IPR027417 -
Seca8g08117 1404 FunFam ABC transporter B family member 20 398 645 - -
Seca8g08117 1404 Gene3D ABC transporter type 1, transmembrane domain 802 1143 IPR036640 GO:0005524|GO:0016020
Seca8g08117 1404 CDD ABC_6TM_Pgp_ABCB1_D2_like 827 1138 - -
Seca8g08117 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 408 643 IPR003439 GO:0005524
Seca8g08117 1404 MobiDBLite consensus disorder prediction 731 747 - -
Seca8g08117 1404 Pfam ABC transporter 1173 1321 IPR003439 GO:0005524
Seca8g08117 1404 MobiDBLite consensus disorder prediction 664 808 - -
Seca8g08117 1404 Coils Coil 254 274 - -
Seca8g08117 1404 FunFam ABC transporter B family member 20 70 411 - -
Seca8g08117 1404 FunFam ABC transporter B family member 6 1002 1152 - -
Seca8g08117 1404 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 383 - -
Seca8g08117 1404 PANTHER ABC TRANSPORTER B FAMILY 48 844 IPR039421 -
Seca8g08117 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 832 1124 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g08117 1404 FunFam ABC transporter B family member 6 772 1000 - -
Seca8g08117 1404 MobiDBLite consensus disorder prediction 784 808 - -
Seca8g08117 1404 SMART AAA_5 1182 1369 IPR003593 GO:0016887
Seca8g08117 1404 SMART AAA_5 435 614 IPR003593 GO:0016887
Seca8g08117 1404 Gene3D - 398 645 IPR027417 -
Seca8g08117 1404 MobiDBLite consensus disorder prediction 13 60 - -
Seca8g08117 1404 MobiDBLite consensus disorder prediction 755 783 - -
Seca8g08117 1404 Gene3D ABC transporter type 1, transmembrane domain 70 659 IPR036640 GO:0005524|GO:0016020
Seca8g08117 1404 SUPERFAMILY ABC transporter transmembrane region 819 1140 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08117 Seca-Chr8 178690610 178700139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08117 53 701 Calmodulin-binding Proteins AT2G36910 43.511 2.10e-159 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08117 K05658 - gmx:100799399 2519.96