Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08110 ATGAAGAGAGAAAGAGAAGTTGATTGTGTAACCATGGCCAATTACTTGATGTTGCTTTCTCGTGGCACCACCACCGCCTACCCTTCCGCTTCCAATAACCACCGTGTGTTTGAGTGCAAGACATGTAACCGTCAGTTTTCGTCGTTTCAAGCACTGGGAGGACACCGTGCCAGTCACAAGAAGCCGAGATTGATGGCAGAAATAGGGGAAGGGGATGTGCTTCAACCACCAAAGCCTAAAACGCATGAGTGCTCTATTTGTGGATTGGAGTTTGCGATTGGACAGGCTTTGGGTGGCCACATGAGGCGACACAGAACAGCTGCAGCAGCTAATTCTAATTCCAATGGAAACGTGCAGATGATGCAGAATTCTGTAACTACCACTAGCACTACTACTACTACTACTAGTGGTGGTGGTAATAGCAGCAGCATTGAAAATGATACTTCAGAGAACAGGGGCAATAACGGCACCAACAGAGTTTTGTTTCTGGATTTGAATCTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGTCAACCCACTCCTTTGGTGGGTTGTTTCAATTGA 573 0.4572 MKREREVDCVTMANYLMLLSRGTTTAYPSASNNHRVFECKTCNRQFSSFQALGGHRASHKKPRLMAEIGEGDVLQPPKPKTHECSICGLEFAIGQALGGHMRRHRTAAAANSNSNGNVQMMQNSVTTTSTTTTTTSGGGNSSSIENDTSENRGNNGTNRVLFLDLNLTPFENDLEFLKIGQPTPLVGCFN. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08110 190 SMART c2h2final6 82 104 IPR013087 -
Seca8g08110 190 SMART c2h2final6 37 59 IPR013087 -
Seca8g08110 190 MobiDBLite consensus disorder prediction 126 157 - -
Seca8g08110 190 PANTHER ZINC FINGER PROTEIN ZAT5 8 172 - -
Seca8g08110 190 Gene3D Classic Zinc Finger 32 57 - -
Seca8g08110 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Seca8g08110 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Seca8g08110 190 Gene3D Classic Zinc Finger 74 142 - -
Seca8g08110 190 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Seca8g08110 190 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Seca8g08110 190 SUPERFAMILY beta-beta-alpha zinc fingers 35 104 IPR036236 -
Seca8g08110 190 Pfam C2H2-type zinc finger 36 62 - -
Seca8g08110 190 Pfam C2H2-type zinc finger 82 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08110 Seca-Chr8 178647482 178648054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08110 12 181 C2H2 Transcription Factor Family AT2G28710 43.353 2.77e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g08110 zf-C2H2_6 1.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08110 - - gmx:100816598 211.075