Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08106 ATGGTGAACGTGATGGAATGGCAGAAACAGCTGCAGAGGTGGCATCAGAATGGGAATGGGAATGTTGATGTCAATGGAGAAATGATGTATGTGAAGGTGATGACTGATGAGCAGTTGGAAACTCTGAGGAAACAAATTGCAGTTTATGCCACCATTTGTGAGCAACTCATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGCAGGGGTTAGGCTGGGAAATATATACTGTGACCCATTGATGACATCTACTGGCCACAAAATAACATCCAGACAGAGGTGGACTCCTACACCTGTGCAGCTTCAGATTCTTGAGCGTATATTTGATGAGGGGAATGGAACTCCAAACAAGGAAAAAATCAAAGAGATTACTGCTGAACTGGGCCACCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAAAATAGGCGTGCTAGATCAAAAAGAAAACTGCAAAATGTGGCACCTAGTAACACTGAATCAGAAGTAGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCAGAGGAATTTCAGTCCCAACAAAATGTAACTACTACAGGTGCTGAAAAGTTGTGCTTCCAACAAAACCCTCAAGCTCAATCATGCTCTGAGTTGCAATACTTGAATCCAGATTCTAATAGACCATATTCCATGCTCCAATCAAGAAATTTGAGTCGTGTGTCTGCTTTTGATGAGGTGCTATCAAACTCAAGGAGTGACTATCTAGCAGGAAAAATGGAAGTAGATGGAAGTTACAATTTATACCAGCAAGCAGGAGACAACAATTGTGACTAG 816 0.4154 MVNVMEWQKQLQRWHQNGNGNVDVNGEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHRTLSAQQDLAAGVRLGNIYCDPLMTSTGHKITSRQRWTPTPVQLQILERIFDEGNGTPNKEKIKEITAELGHHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVETEVDSKDKKTKPEEFQSQQNVTTTGAEKLCFQQNPQAQSCSELQYLNPDSNRPYSMLQSRNLSRVSAFDEVLSNSRSDYLAGKMEVDGSYNLYQQAGDNNCD. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08106 271 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Seca8g08106 271 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Seca8g08106 271 Gene3D - 96 160 - -
Seca8g08106 271 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Seca8g08106 271 SMART HOX_1 92 159 IPR001356 GO:0003677
Seca8g08106 271 MobiDBLite consensus disorder prediction 168 183 - -
Seca8g08106 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 264 IPR044559 GO:0003700
Seca8g08106 271 CDD homeodomain 94 155 IPR001356 GO:0003677
Seca8g08106 271 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08106 Seca-Chr8 178599778 178602462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08106 4 267 Wox Gene Family AT4G35550 50.690 2.95e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca8g08106 Homeodomain 1.3e-18 CL0123