Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08101 ATGGTTGATCATTGTGAAGGAAATTCTGTTAATGGAGATGAGGTTAATATTTCGAATGATGGCAATTTTTATTGTAAGGGGGGTGATTTAGGACAGAATGAGGATGAAGAATATATGAAGAGAATTAGTGAATTGACTGTTGATGATATAAGAGGTATTGAATTTGATGATGAGGAAGCAGCTTGTAGTTTTTATAAAAGCTATGCAAAATGTAATGGGTTTGTTGTTAGGAAGGATGAGGTAGACCATGATTTTAAGGGAAATATTGTTATGAGACAACTGGTGTGTAACAGAGAGGGTGAAAGGAAGAAGAAACATTTGATGCGTGTGGACAGAGTTAGGCAGCCCAGGGCTTTGACTCGAACTCGGTGTCCTGCAAGGCTAAGAGTACATTATAGTTTCAAAACTGGTAAATGGAGGGTTGCTGTATTTGAGGAAAAGCACAATCATGAGTTAACTCCTCTTAAATTTGTTCATTTGATACCTGCTTATAGAGGTTTGACTGAAGTGATAAAGTTCAGGTTAATAACTTACACACACATGGTGTAA 549 0.3679 MVDHCEGNSVNGDEVNISNDGNFYCKGGDLGQNEDEEYMKRISELTVDDIRGIEFDDEEAACSFYKSYAKCNGFVVRKDEVDHDFKGNIVMRQLVCNREGERKKKHLMRVDRVRQPRALTRTRCPARLRVHYSFKTGKWRVAVFEEKHNHELTPLKFVHLIPAYRGLTEVIKFRLITYTHMV. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08101 182 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 153 - -
Seca8g08101 182 Pfam FAR1 DNA-binding domain 63 153 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08101 Seca-Chr8 178535614 178541059 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g08101 FAR1 2.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08101 - - ccaj:109792835 172.555