Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g08094 | ATGTGGATACTGACCATTGTGTTCTACACATGTGTTTTGATCCCATTGATGCAACTGAAGAGGGCACTTTCAAGCATGTTTGGCTTCATTCTCATGGTTTTCTTCTCTTATGACAGCAAAGGTATAACCAAGGAGATGGAGTTCCCAGAAATTCCATCCTTACCCGTGGCCAGGTTCGAAGATTTGAGAAGCCAATCATCTGTAGGAGAAGATGAACAGAGAGAAGAGGAGATTTGTTCCATTTGCTTGGTGGAGTTTGAAGGAGAAGATGCAGTGAGCAAGCTGGGAAGATGTGGCCATGTGTTCCATATCAATTGCATTGACCAATGGCTAGACCGCAATCAATTCTCTTGTCCACTTTGTAGGTCATTTTTATTTTCTCCACATCAAATCCATACAAACAAATAG | 408 | 0.4191 | MWILTIVFYTCVLIPLMQLKRALSSMFGFILMVFFSYDSKGITKEMEFPEIPSLPVARFEDLRSQSSVGEDEQREEEICSICLVEFEGEDAVSKLGRCGHVFHINCIDQWLDRNQFSCPLCRSFLFSPHQIHTNK. | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g08094 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 79 | 122 | IPR001841 | - | |
| Seca8g08094 | 135 | SMART | ring_2 | 79 | 121 | IPR001841 | - | |
| Seca8g08094 | 135 | Pfam | Ring finger domain | 79 | 122 | IPR001841 | - | |
| Seca8g08094 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 127 | IPR013083 | - | |
| Seca8g08094 | 135 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 51 | 129 | - | - | |
| Seca8g08094 | 135 | SUPERFAMILY | RING/U-box | 70 | 128 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g08094 | Seca-Chr8 | 178512588 | 178512995 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca8g08094 | 5 | 128 | C3H Transcription Factor Family | AT4G38140 | 41.129 | 5.12e-26 | 94.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g08094 | - | - | pvu:PHAVU_007G012000g | 172.17 |