Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08090 ATGGATTTGGACCAGTGGATCTCTAAGGTTAAAGATGGCCAGCATCTTCTCGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATTGAGGAATCCAATGTGCAGCCTGTCAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTCATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTCGATCGAGGTTACAATAGTCTTGAAGTTTTCACCATCCTTTTATTGCTAAAAGCTAGATACCCAGCCAATATTACCCTTTTACGTGGAAATCATGAAAGTAGACAACTAACCCAGGTTTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCTTGGCGGTATTGTACAGATGTTTTTGACTATCTAACACTTTCTGCCATTATAGATGGAACGGTGCTTTGTGTTCATGGTGGCCTTTCTCCTGACATACGAACAATTGATCAGATAAGGGTCATTGAACGGAACTGTGAAATTCCTCATGAGGGTCCTTTTTGTGATCTAATGTGGAGCGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCTCGTGGAGCAGGTTGGCTTTTTGGATCTAGGGTCACTTCCGAGTTCAATCACATAAATAATCTTGATCTTGTTTGTCGAGCGCACCAACTTGTTCAAGAAGGCCTGAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAGAATATGGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACTGGCGTTCCATATTTCTTATAA 912 0.4057 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08090 303 CDD MPP_PP2A_PP4_PP6 2 285 - -
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Seca8g08090 303 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Seca8g08090 303 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Seca8g08090 303 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Seca8g08090 303 Gene3D - 1 303 IPR029052 -
Seca8g08090 303 SUPERFAMILY Metallo-dependent phosphatases 2 286 IPR029052 -
Seca8g08090 303 SMART pp2a_7 16 287 IPR006186 GO:0016787
Seca8g08090 303 FunFam Serine/threonine-protein phosphatase 1 303 - -
Seca8g08090 303 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 303 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08090 Seca-Chr8 178488143 178496130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08090 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.70e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08090 K15498 - qlo:115968864 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08090 8 178488143 178496130 Seca8g08090 8 178488143 178496130 ECH