Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08085 ATGGCATCGCAGGGGAGGAAGAGAGTTGATGCCGTCGATTCCCGTTCTGCTTCAGTTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCTCGATGCGAAGAGTGCAACAAGGATGTGCCGGTGGCATTGATCAGTATGCACAGTTGCAGCCTTGAAGCTAAAATTAAGATGAACCTCGATGCTCAGGTTGTTGAACAAACTACTGAAGTCAAGAAGCCAGAGAGGAAGAAGCCTAAATCTAAAGAACCAAAGGCAAAAAGGGCCAAGGTTGAGAAAGGGAAGAAGAAGGTCAAGGATCCTAACATGCCCAAGCGTCCTCCCACTGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAAACTTTCAAGGAAGCAAATCCTGATTCAAAAGATGTTAAAAGGGTTGGCAAAGAGGCTGGTGAGAAGTGGAAGGCTATGACTGAGGAAGAGAAGAAGCCTTACTTGGATAAAGTTGCTGAACTTAAGGCAGAATATGAGAAGGCTATGGCAACCTACAATGCTGCTGAAGATGAAGTATGGATTTATCTTCTAAGTTTTTTTTTTTTTAATATTGTGTTAATTATTTATTCTCATCCCTTCCGAAATGCTGTTGCTTTTGTTCAGGGTCAAGAGGCTTCTGATAAGGAAGCCACTGCAGAAGACGAAGAGATAACAGAAGAGGAGTAG 684 0.4313 MASQGRKRVDAVDSRSASVLVRAKDGSAFARCEECNKDVPVALISMHSCSLEAKIKMNLDAQVVEQTTEVKKPERKKPKSKEPKAKRAKVEKGKKKVKDPNMPKRPPTAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKAMTEEEKKPYLDKVAELKAEYEKAMATYNAAEDEVWIYLLSFFFFNIVLIIYSHPFRNAVAFVQGQEASDKEATAEDEEITEEE. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08085 227 Gene3D High mobility group box domain 98 174 IPR036910 -
Seca8g08085 227 MobiDBLite consensus disorder prediction 77 93 - -
Seca8g08085 227 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Seca8g08085 227 CDD HMG-box_AtHMGB1-like 104 164 - -
Seca8g08085 227 SMART hmgende2 102 173 IPR009071 -
Seca8g08085 227 SUPERFAMILY HMG-box 94 174 IPR036910 -
Seca8g08085 227 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Seca8g08085 227 Coils Coil 157 177 - -
Seca8g08085 227 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 214 - -
Seca8g08085 227 MobiDBLite consensus disorder prediction 66 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08085 Seca-Chr8 178435550 178437475 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca8g08085 HMG_box 5.8e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08085 K25507 - gmx:100306558 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08085 8 178435550 178437475 Seca8g08085 8 178435550 178437475 ECH