Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08082 ATGCTTGATAATGTGGACCAATTTCGTGATTTCATCAACTCAACTCGGAGATTATGTTCTCTTCTAGGTGGTTGGGTTTCTGGTTTAATATCAAAGCCTTACAGAAAAGTGGTTGGCTCAACATTTGATGGTTCTCTTTCTAGATTGGCTGAGGAAAGAGAAAATTATTATTTAGAGTTCATGGATGAGTGTATATATATTAGTTCATCTGATGATGACTTGGAGGAGATAGAAGATCCGAGGAGGAGTCTCCCACAGTGGGCTACTACTGAAAGGAATTCAGATCACGGTGGGTGGTCTAGGAAGGATAGTTCTTCAAGAGGGGCAAATGGTTCAAACACAAGCTCTTCTAACATATATAATCATTCACAAGTCAAGCCCCATACTCAACCTGTGCCCAGCAAGAATACACCAAACCACAAAGTTGCACGAAGAGATGAACCTTCCTATCATACCCAGAACGGAAACACAAGTCAGCATCAGACAGTTAATTCTCGAATTTCTAATACTTATGGCGCCAATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCATCATCTGTTCAACCATCGGCAACAAGGGCTCTTCCATCTTCATCATTTGCACTGGATAGCAGATTAAGCAACTTAAAAGATAACATAGGCAGCAGTCAGCTTCATGATGCTTATTGGAATCGTCGCCTTGGAGTAGGACCTAGCACGTCCAGTGACAAAGGCAATATTCGTGACCATTTTAGCAGAGGCAATGATGAAGATCGTTTCATGTATCAAAATGGTGGGAGTAGGATTATTCCTTCATCTGTGATGCTTGGAAAGGCTATAACTCCACCGTTTGCTAGTTCTAGTGAATCTGCATACCGTTCTGGAGCAGGTGATGAAAGGGCTTCTGGAAATGACGAGAGGCTAATTTATGAGGCAGCATTAGAGGATATCAGTCAACCAAAAGCAGAAGCTGATTTACCTGATGGTCTTATGTCTGTCTCTCTTCTGAGACACCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGTTTGGGGGGTATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATCGCACTCATCTTAATGCAGAGGCCATTACAGTCAAAATCGAAAGTGGATGATACATGCAATCATAAAACTGAAGCCTTGAATTTGGATGATGATGATGACATTGATAGTGTTGATGTAGAGAAGCTTAAAAGGAATGAAGATTCTGATGATATAAAACCTGTTACAGAACCAAGTAGTTCCACTTGGGCACCACAAAGGAAAAGGCCTGCTGCTGGTACACTGGTTGTCTGTCCTGCAAGTGTTCTTCGGCAGTGGGCCAGGGAGCTTGATGATAAAGTTGGGGATGAAAAACTCTCTGTTTTGATTTATCATGGAGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAGTTTGATGTGGTTCTCACAACATACTCTCTCGTGACTAACGAAGTTCCAAAGCAACCGTTAGTTGAGGAGGATGATATGGATGAAAAAGATGGGGAAAGATTTGGATTATCCTCTGAGTTATTTGTCAGTAAAAAGAGGAAAAAGCCATTTAATGGAAGTAAGAAGAGTAAAAAAGGTAGAAAGGGAATTGACAGTTCTTCTATTGATTGTGCTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGTTGCAGCCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTTTACAATACAATAAAAGTTCCGATATCCAGAAATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGATTGATGGGAAGCCAATAATCACTTTACCTCCTAAAACTATAAAGCTGAGCAAGGTAGATTTCTCCATTGAGGAACGGGCCTTCTACCACAAGTTGGAAGCCGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTCAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCATCCACTTCTTGTTAAAGATTATGATTCAGATCATGTTGGAAAAGATTCTATTGAAATGGCAAAAAAGCTTCCAAGGGAGTTGCTGATTAATCTATTTAATTGCCTGGAAGCAACCTTTGCTATATGTCATGTTTGCAATGACCCACCTGAAGACCCTGTTGTTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCGGAATATTTGACAGGTGATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGATGATCTTGTCTTTACCAAAACAACTTTGAGGAGTTGCCTCTCTGATGATCTTAATGGTAGTAGTTCTGCAAATTCGCATCCTATCGATTATTCACTAGTGCAGCATAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGTAAATTGAAGACTCCTAGTTCTGGTTTACCGAATTGCTCTGGTGGCAATAGAGATTCACTGTCTCCTGATAATTCATATATTGAAGATTGTGACTCAGATGTTAGGATTACAAAACACACAAGAAAATATTCAGAGTCCACAGCTGAAGGACCAATAAAGGCTATAGTTTTTTCTCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCATTGGAACAATATGGTATACAATACAGGAGACTTGATGGTAGGATGACTCTGGTCGCGAGGGACAAAGCTGTTAAGGATTTCAACACTGATCCAGAGGTTACCGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTATGGTGGAATCCAACAACAGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGCCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCACGCTGGCAGTTCCGGAACTCGTCTTACAGTTGAAGATCTGAAATATCTTTTCATGGTCTAG 3255 0.4028 MLDNVDQFRDFINSTRRLCSLLGGWVSGLISKPYRKVVGSTFDGSLSRLAEERENYYLEFMDECIYISSSDDDLEEIEDPRRSLPQWATTERNSDHGGWSRKDSSSRGANGSNTSSSNIYNHSQVKPHTQPVPSKNTPNHKVARRDEPSYHTQNGNTSQHQTVNSRISNTYGANYEKMSSQQAFKRTLPSSVQPSATRALPSSSFALDSRLSNLKDNIGSSQLHDAYWNRRLGVGPSTSSDKGNIRDHFSRGNDEDRFMYQNGGSRIIPSSVMLGKAITPPFASSSESAYRSGAGDERASGNDERLIYEAALEDISQPKAEADLPDGLMSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMIALILMQRPLQSKSKVDDTCNHKTEALNLDDDDDIDSVDVEKLKRNEDSDDIKPVTEPSSSTWAPQRKRPAAGTLVVCPASVLRQWARELDDKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYSLVTNEVPKQPLVEEDDMDEKDGERFGLSSELFVSKKRKKPFNGSKKSKKGRKGIDSSSIDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIITLPPKTIKLSKVDFSIEERAFYHKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDHVGKDSIEMAKKLPRELLINLFNCLEATFAICHVCNDPPEDPVVTMCGHVFCYQCVSEYLTGDDNMCPAVDCKEQIGDDLVFTKTTLRSCLSDDLNGSSSANSHPIDYSLVQHSEYSSSKIKAVLEVLQSNCKLKTPSSGLPNCSGGNRDSLSPDNSYIEDCDSDVRITKHTRKYSESTAEGPIKAIVFSQWTSMLDLVETSLEQYGIQYRRLDGRMTLVARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSGTRLTVEDLKYLFMV. 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08082 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 828 IPR013083 -
Seca8g08082 1084 MobiDBLite consensus disorder prediction 536 555 - -
Seca8g08082 1084 SMART helicmild6 943 1026 IPR001650 -
Seca8g08082 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 662 IPR027417 -
Seca8g08082 1084 MobiDBLite consensus disorder prediction 237 258 - -
Seca8g08082 1084 ProSiteProfiles Zinc finger RING-type profile. 778 814 IPR001841 -
Seca8g08082 1084 MobiDBLite consensus disorder prediction 417 439 - -
Seca8g08082 1084 SMART ultradead3 329 641 IPR014001 -
Seca8g08082 1084 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 426 513 - -
Seca8g08082 1084 CDD SF2_C_SNF 927 1035 - -
Seca8g08082 1084 SUPERFAMILY RING/U-box 776 834 - -
Seca8g08082 1084 Pfam Helicase conserved C-terminal domain 930 1026 IPR001650 -
Seca8g08082 1084 MobiDBLite consensus disorder prediction 149 164 - -
Seca8g08082 1084 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 542 674 - -
Seca8g08082 1084 CDD DEXDc_SHPRH-like 333 662 - -
Seca8g08082 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1083 IPR027417 -
Seca8g08082 1084 SMART ring_2 778 816 IPR001841 -
Seca8g08082 1084 Pfam SNF2-related domain 336 739 IPR000330 GO:0005524|GO:0140658
Seca8g08082 1084 MobiDBLite consensus disorder prediction 103 137 - -
Seca8g08082 1084 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 913 1079 IPR001650 -
Seca8g08082 1084 MobiDBLite consensus disorder prediction 76 164 - -
Seca8g08082 1084 ProSitePatterns Zinc finger RING-type signature. 793 802 IPR017907 -
Seca8g08082 1084 Gene3D - 308 391 IPR038718 -
Seca8g08082 1084 Gene3D - 525 673 IPR038718 -
Seca8g08082 1084 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 624 IPR014001 -
Seca8g08082 1084 Pfam Zinc finger, C3HC4 type (RING finger) 778 814 - -
Seca8g08082 1084 Gene3D - 429 515 IPR038718 -
Seca8g08082 1084 Gene3D - 677 1083 IPR027417 -
Seca8g08082 1084 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08082 Seca-Chr8 178395004 178404802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08082 61 984 RAD5 or RAD16-like Gene Family AT1G50410 56.489 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g08082 SNF2_N 5.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08082 - - gmx:100795142 1724.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08082 8 178395004 178404802 Seca8g08082 8 178395004 178404802 ECH