Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08069 ATGTCGGAAGCACCGTCTCAGCCACCGGTCCCACCCACGGAGGCGCCGCCCTACTGGTGTTACCACTGCGAGAAACGCGTCTCCATCGAAACGCTCGCCAATCTCCCTGACGTCATCTGCGGCGAGTGCAAGAACGGCTTCGTTGAATCCATCCCCACTCCCTCTCGCTCTCGCTCCCCTTCCTCCTCCTCCGATGACCCCTACTTCGGCTCTCACTTCCTCCAAGTCCTTCGCCTAATCGCTCAATCGGCGCGTGACGACGACGACGCCTCTCCTCCCCCGCCTCCGAACCGTTCACCGGAGAACGATTTCCTCAGGATCGAGCTCGGAGGCTGGGGTGACGACGACAACGATGACGACGACGACGGCGTCGAGTTTCACAACGACAGCGAGGAACACGAAGTTGCCGTCGAGGATCAGGAAGATCGATCCGTCAACGAGGATCCGCACGGAGATGACGAAGATCTAAGGCGAAGGAGGCGCGAACTGCTGCGGCTTCGGATTAGGGATTTGGCGACTCGAACCCGTAGCATGCGGAACCGGATCTTGGATTGGGCTGAGATTCTGATGGGACTGGAAGACAATTCCATAGAGTTCCGGCTTCAGGTGCCGGAATCAGACCGGTATGTCGGGAATCCGGAGGATTATGTGGACGCGGCGGAGTATGAGGCGTTGCTGCAGACGCTGGCGGAGAGCGACGGAAACGGGAGGAGGGGAGCCCCGCCGGCATCGAAGTCTGCGGTGGAAGCGTTGCCGACGGTGAAGATTGTGTCGGAGAGTGAGGCTGTGGCGTGTGCTATATGTAAGGACTTGGTTGGTGTTGGAGAGTTAGCTAAGAGATTGCCGTGTGGGCATGAGTACCATGGAGATTGCATTGTTCCATGGTTGAGTACCAGAAATTCTTGCCCTGTGTGCAGGTTTGAGCTTCCTACGGATGATAAAGAGTATGAGGAAGAAAGAGTGGTCAACACTTCTTCTAATGGAGCTTCAGGTTCGGGTTCGGGTCGGGGTGGAGCTGCAACCATTTGA 1029 0.5743 MSEAPSQPPVPPTEAPPYWCYHCEKRVSIETLANLPDVICGECKNGFVESIPTPSRSRSPSSSSDDPYFGSHFLQVLRLIAQSARDDDDASPPPPPNRSPENDFLRIELGGWGDDDNDDDDDGVEFHNDSEEHEVAVEDQEDRSVNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESDRYVGNPEDYVDAAEYEALLQTLAESDGNGRRGAPPASKSAVEALPTVKIVSESEAVACAICKDLVGVGELAKRLPCGHEYHGDCIVPWLSTRNSCPVCRFELPTDDKEYEEERVVNTSSNGASGSGSGRGGAATI. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08069 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 131 310 - -
Seca8g08069 342 MobiDBLite consensus disorder prediction 113 127 - -
Seca8g08069 342 MobiDBLite consensus disorder prediction 322 342 - -
Seca8g08069 342 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Seca8g08069 342 MobiDBLite consensus disorder prediction 84 155 - -
Seca8g08069 342 FunFam E3 ubiquitin-protein ligase RING1-like 228 312 - -
Seca8g08069 342 SUPERFAMILY RING/U-box 260 312 - -
Seca8g08069 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 312 IPR013083 -
Seca8g08069 342 MobiDBLite consensus disorder prediction 321 342 - -
Seca8g08069 342 MobiDBLite consensus disorder prediction 128 155 - -
Seca8g08069 342 SMART ring_2 265 305 IPR001841 -
Seca8g08069 342 Pfam Ring finger domain 265 306 IPR001841 -
Seca8g08069 342 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08069 Seca-Chr8 178257647 178258675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08069 176 318 C3H Transcription Factor Family AT5G01980 50.000 7.18e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08069 - - gmx:100802200 503.442