Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08059 ATGTCGGCCTCCGATGGAACCACCAACGGGTCAATGATTGACCCACAACGCAACCAGCAATTAGCCGTCAAGAAACCCCCCTCAAAGGACCGTCACAGCAAGGTCGACGGCCGTGGACGCCGTATACGGATGCCAATCATTTGCGCCGCACGTGTCTTCCAGCTCACGCGCGAGTTAGGCCATAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAACCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCCGCCAGCTTCTCCTCCGTCTCCGTCTCTGTCCGTGGCAGCAACGCTTCCAACTCCCTTCCTTCCCCTTCCTCCACTTCCGCTTCCTCTCTCGACCACAAGCCCTTGCTCGCTTCCACCCCTTTCATTCTTGGCAAGCGTATACGCACCGATGATGATTCCTCTGCCGCCAAGGATGACGCCGTTTCGGTGGGACACTCCCTCGTGGGCCCTGCTACCCCCGCTGGATTGTGGGCCCTTCCCGCTAGGCCCGATTTTGGACAAATTTGGAGCTTCGCGGCGGCTGCTGCTGCTGCGGCTCCTCCGCCGGAAATGGTGGTGCAGCCTGCAGCCGTGTCGGTGTCGGTGTCTCAGCAGCAGCAGCAGGCTTCGTTGTTCGTTCATCATCATCATCAACAGCAACAAGCCATGGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTATCTTCCGGGGCATCTGAATTTGCTGGCATCGTTGTCCGGTGGACCTGGAAATTCTGGTCGGAGAGACGATGAGCCTCGTTGA 789 0.597 MSASDGTTNGSMIDPQRNQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGSNASNSLPSPSSTSASSLDHKPLLASTPFILGKRIRTDDDSSAAKDDAVSVGHSLVGPATPAGLWALPARPDFGQIWSFAAAAAAAAPPPEMVVQPAAVSVSVSQQQQQASLFVHHHHQQQQAMGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08059 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 237 IPR005333 GO:0003700
Seca8g08059 262 ProSiteProfiles TCP domain profile. 28 82 IPR017887 -
Seca8g08059 262 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g08059 262 MobiDBLite consensus disorder prediction 24 40 - -
Seca8g08059 262 MobiDBLite consensus disorder prediction 100 120 - -
Seca8g08059 262 Pfam TCP family transcription factor 28 129 IPR017887 -
Seca8g08059 262 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08059 Seca-Chr8 178188704 178189492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08059 7 262 TCP Transcription Factor Family AT5G23280 63.707 5.78e-102 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca8g08059 TCP 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08059 K16221 - gmx:100799005 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08059 8 178188704 178189492 Seca8g08059 8 178188704 178189492 ECH