Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08049 ATGTCTTCCGGCAACGGCGGCGGTGGCGGGGTTAAGCCGTACTTCTGCCACGTGTGCGACCGGAGAGTTACCTGCGCCGATGATGATTCCGAACCTTTCTGCCCGATCTGCCTCCAAGGTTTTGTCGAAGAATGCAATCCTAATCCCAGTCCCAACAGTAACCCTAACCCTAACGTCGCCTTTCGTTTCAACTCGGATCCTTCTTCCGATTCCGATTTCCCCTTCCATCCCTTCTCCCTTCTCCCTCTATTATTATCCTCCGCTTCAACAACCGCCGTCGACCTCCAGAACCCTCGCCACTTCTCCGATTCTCCCGAATTCAGTACCCGCCCCGAATCGGACATGTTCGACCCCTTCCTCTTTCTCCAGAACCACCTCCAAGGTCTTCGCGCCGATGGGGCTAACATCCAATTCGAGATCAATCACCCTTCTGAACCGGGGTTTCGCCTCCCCACCAACATCGGCGATTACTTCCTCGGCCCTGGCCTCGAGCAATTGATTCAGCAGCTCGCCGAGAACGACCCCAATCGTTATGGGACGCCGCCGGCATCGAAAGATGCCGTTCAGAATCTTCCCACCGTAACCGTCGACGACGACTTGTTGAACTCGGAGTTGAACCAGTGCGCTGTTTGCCAGGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGCAAGCACGTGTACCATGACGATTGCTTGCTTCCCTGGCTTCAATTGCATAACTCTTGCCCTGTGTGCCGATATGAATTGCCTACCGATGATGCCGATTATGAGAATCGGATCAGTGGGGACGGTGGCGAGGGGTCGAGGTCTGTTGATAATGGTAGCAGTGGCGGCGGTGGAGGGGGAAATAGACCTGTTCACAGAACTTTTAGAATATCTTTGCGATACCCATTTGGTGCAGGTGAATCTGCTCAGGAAAGTGGTGAAAGAGGATTTGGAAATAGGGAAGATGATTTGGATTGA 972 0.535 MSSGNGGGGGVKPYFCHVCDRRVTCADDDSEPFCPICLQGFVEECNPNPSPNSNPNPNVAFRFNSDPSSDSDFPFHPFSLLPLLLSSASTTAVDLQNPRHFSDSPEFSTRPESDMFDPFLFLQNHLQGLRADGANIQFEINHPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQNLPTVTVDDDLLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDADYENRISGDGGEGSRSVDNGSSGGGGGGNRPVHRTFRISLRYPFGAGESAQESGERGFGNREDDLD. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08049 323 SMART ring_2 208 248 IPR001841 -
Seca8g08049 323 MobiDBLite consensus disorder prediction 260 323 - -
Seca8g08049 323 Pfam Ring finger domain 206 249 IPR001841 -
Seca8g08049 323 SUPERFAMILY RING/U-box 187 255 - -
Seca8g08049 323 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
Seca8g08049 323 Pfam zinc-ribbon 13 44 IPR039525 GO:0061630
Seca8g08049 323 FunFam E3 ubiquitin-protein ligase RING1-like 169 255 - -
Seca8g08049 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 253 - -
Seca8g08049 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 255 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08049 Seca-Chr8 178058131 178061771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08049 152 274 C3H Transcription Factor Family AT5G01980 46.341 3.92e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08049 K11982 - gmx:100785289 389.037