Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08042 ATGCTTCTTGTTGAACATCTGATTCTGCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTGCTGGCATTGGGTGAAGTAGTTGGAACTGAGAGTAGAGGTCTTTCGACTGATACTATTGCCTCTTTGCCTTCAGTCAACTACAAGACCGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGTAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCCGCTTCTGGGAGCAACTTGTAG 354 0.4463 MLLVEHLILQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIASLPSVNYKTGSDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08042 117 SUPERFAMILY RING/U-box 57 111 - -
Seca8g08042 117 FunFam E3 ubiquitin ligase BIG BROTHER-related 32 113 - -
Seca8g08042 117 Pfam Ring finger domain 64 106 IPR001841 -
Seca8g08042 117 ProSiteProfiles Zinc finger RING-type profile. 66 107 IPR001841 -
Seca8g08042 117 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 115 IPR043312 -
Seca8g08042 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 113 IPR013083 -
Seca8g08042 117 SMART ring_2 66 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08042 Seca-Chr8 178015606 178018147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08042 10 110 C3H Transcription Factor Family AT3G63530 54.808 3.81e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08042 K19045 - gmx:100306465 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08042 8 178015606 178018147 Seca8g08042 8 178015606 178018147 ECH