Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08036 ATGTTGAACGGTCAAGGTGATAATGTGGCACCGGCACAAGGTTCTACTACTTCTTCTTCTTCTGGTTATAAGGGAAAGAAACGCGGCAGAAAGAGTAAAGCTGAAAAAGAAGCAGGTTCTACTTCTTCTTCTTCTTCTTCTGGTTATAAGGGAAAGAAGCGCGGCAGAAAGAGTAAAGCTGAAAAAGAAGCAGGTTCTACTACTACTACTTCTTCTTCTGATTATAAGGGAAAAAAGCGCGCCAGAAAGAGTAAAGCTGAAAAAGAAGCAGGTTCTACTACTTCTTCTTCTTCTGGTTATAAGGGAAAGAAGCGCGGCAGAAGGACTAAAGCTGAAAAAGAAGCCTTTTTGAAGAACTTGTTAGATGAAGCAAATGGGTCGGTGGACAAGGAAGATGGTGGTGGTGATGGGGAAGGGGTTTCTTCTTCTGTTCAAGCTGTTGAGAGAAAGAAAGTGGAGAAGGAGGCCTTGGATGGAGCAAAAGGGGTTGATGATCCTGCATTGGTTGAAAATGTAAAGGAGGGCAATTTGGTGGACAGGGAAGCTACACAGGACAATAGCCACGGGGAAAATGGTAGGGTTATCAAGAACAAGAAGGGGCCTGGCAGAAAAAGAAAGCTCACCGAGAAAGGTGAGTCTATTTCTAAACAGCTGGCTAGTAGAAAAAAGAGAGGTCCAAGGCGTAGAGATGGAGATGGTGAAGGAGAGGCAAAGAGTGATGTTTTAGGGGCTCGGGCTCAGGCTCCGGACAGTGGTGGTGAATTTGAAATTCCTATAGATTCTTCAGGAATCGGCCCTCAGAAACAGAAGTATCAGCTTAGGCACCGTACTAGTAAAGACTATAAACAGGAGATGCCAAAAGCCAAAAAGAAAGATGCCAAGTGGATTGAAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCCCGGTTGTGAGATGCACAAGTTGTAAACGGAAAAGATTTTGCTTACACTGTATAAAGAATTGGTATCCTCGACTGAAAGAGGATGATATTGCTAAGGCATGCCCTGTTTGCTGTGGTAATTGCAATTGCAAAGCCTGCTTGCGATCTGATGATCTTATTAATAAAATAAAAGCAGATGAGAAAATTAATGAAGATGGGAATGAAGATGGGGAGGTTGAGCACTATAAGTATCTGCTTGGGGAGGTTGAGCACTATAAGTATCTGCTGAAAGGTCTTCTTCCTTATTTAAGACAGTTGAATGAAGAACAAATGATTGAGAAAGAGATAGAAGCTAAGCGACAAGGGCTCTCACTCTCAGAGCTAAAAATAGAAAAGACAAATTCCTCCATTAAAGAGCGTGTGTACTGTGACAACTGCCAAACATCGATATTTGATTTCCACAGAAGTTGTACAAAATGCTGTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGAAACTTCTAGGTGGCACAGATCCAATTGATTTGGGGTTTGACTTCCTAGGTCTTGGTTATATGCATGGTGAAGAAAAAAATGAAGAGGTAAAAGTAATTGCATCACATGCAAATGCCGGGCTGGAGATTCGTGATTGGTCAAAATCTGGGTGGCATGCTGATAGTGATGGTAACATTCCTTGTCCAAAAGCCAATAATGAATGTGACCATGGTTTTCTTGAACTGAGAAGCATACTTTCTCCAAATTTCATCTCTGAGATAGTATGTGATGCAGAAGAACTAGCAGAAGCATATAAGCTTCAAGATGCAGTTGAGATTCTTGATAACTGGTGTTCTTGTTTGAAGCTTGCTAGAAACACAGATGATAAGTATATTAATATGAGGAAGGCAGCTTCTCGTGAAAATTCCATTGACAACTATTTATACTGTCCTAGAGCTGTAGATCTGCAGAAGGAGGATTTAAGGCATTTTCAATGGCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTGGTCATGTGGCGTGCATGCCGTCAGATAGCTAATACAAAGCATGGCATACATTTGGATGTGAAGGCAATTGACTGCTTAGATTGGTGTGAGGGAGAGATTAATATCCATCAATTCTTTACTGGGTATACAGAGGGTCGTAAGGATTGGCTTAATTGGCCTCAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTGTTTGAGGAACGTTTACCTCGTCATTGTGCTGAGTTCATATCGTCGTTGCCCTATAAAGAATATACAGATCCTTACAGGGCTGCACTTAACCTTGCTGTGAAGTTGCCTGAGGGTTGTATAAAGGCTGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTCCATTGTGACATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAAACCTGAGGTCGTGAAAGCCATTGAAAAATTGACTCCAAAGCACCTTGAGCAAGACAAAAGGGAGCTACTTGGAGATAATCTGGATGGAGACACTAATGTTGACATGCTTCACAATTCATCTTCTACCCTAAATGCTTCAGACAACCAAAATGGTGTTCAAGTCATGGAAAATGATAGTGGAATATGTGACGGCAAGGTGGTTGATCAGCTTCATCAACACTCTGATACTAATGATGATGGTCTTTCATGTGGATCAGAGCTCAAAGAGATTGAGAAAGCGGCAATGAATCAAGAAAATTGTATGTCGGTTGGGGATGATGCTTTAGATGGTGCTCTTTGGGATATTTTTCGAAGAGAGGATGTGCCTAAATTGGAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCTATTGCAGTCCGTTAAAGCAGGTTATTCATCCCATCCATGATCAGACCTTTTATCTTAGTATGGAGCATAAGAAGAAGCTGAAGGAGGAGCATGGAATTGAGCCCTGGACTTTTATTCAGAAGCTAGGAGACGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGCGAGTGCTTCCGTTTGACCGAGGAATTCCGTACGCTTCCAATAAATCACAAGTCCGTTGAGGACAAATTGGAGGTGAAGAAAATGACTATTTATGCTATGAAAGATGTGGTTGAGAAATTGAGGGAAGTAAGGTCTGGGGATACCAAGGTTCCAGTGTAA 3252 0.4182 MLNGQGDNVAPAQGSTTSSSSGYKGKKRGRKSKAEKEAGSTSSSSSSGYKGKKRGRKSKAEKEAGSTTTTSSSDYKGKKRARKSKAEKEAGSTTSSSSGYKGKKRGRRTKAEKEAFLKNLLDEANGSVDKEDGGGDGEGVSSSVQAVERKKVEKEALDGAKGVDDPALVENVKEGNLVDREATQDNSHGENGRVIKNKKGPGRKRKLTEKGESISKQLASRKKRGPRRRDGDGEGEAKSDVLGARAQAPDSGGEFEIPIDSSGIGPQKQKYQLRHRTSKDYKQEMPKAKKKDAKWIEEESLMCHQCQRNDKGPVVRCTSCKRKRFCLHCIKNWYPRLKEDDIAKACPVCCGNCNCKACLRSDDLINKIKADEKINEDGNEDGEVEHYKYLLGEVEHYKYLLKGLLPYLRQLNEEQMIEKEIEAKRQGLSLSELKIEKTNSSIKERVYCDNCQTSIFDFHRSCTKCCFDLCLICCRELRSGKLLGGTDPIDLGFDFLGLGYMHGEEKNEEVKVIASHANAGLEIRDWSKSGWHADSDGNIPCPKANNECDHGFLELRSILSPNFISEIVCDAEELAEAYKLQDAVEILDNWCSCLKLARNTDDKYINMRKAASRENSIDNYLYCPRAVDLQKEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRACRQIANTKHGIHLDVKAIDCLDWCEGEINIHQFFTGYTEGRKDWLNWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPYRAALNLAVKLPEGCIKADMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLKPEVVKAIEKLTPKHLEQDKRELLGDNLDGDTNVDMLHNSSSTLNASDNQNGVQVMENDSGICDGKVVDQLHQHSDTNDDGLSCGSELKEIEKAAMNQENCMSVGDDALDGALWDIFRREDVPKLEEYLKKHFREFRHVYCSPLKQVIHPIHDQTFYLSMEHKKKLKEEHGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHKSVEDKLEVKKMTIYAMKDVVEKLREVRSGDTKVPV. 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08036 1083 SUPERFAMILY Clavaminate synthase-like 632 1059 - -
Seca8g08036 1083 SMART cupin_9 735 1041 IPR003347 -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 1 288 - -
Seca8g08036 1083 ProSiteProfiles JmjC domain profile. 754 1041 IPR003347 -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 205 239 - -
Seca8g08036 1083 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 36 1076 IPR045109 GO:0032454|GO:0033169
Seca8g08036 1083 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 298 379 IPR018866 -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 147 161 - -
Seca8g08036 1083 Gene3D Cupin 621 1050 - -
Seca8g08036 1083 Pfam JmjC domain, hydroxylase 917 1024 IPR003347 -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 273 288 - -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g08036 1083 ProSiteProfiles Zinc finger RING-type profile. 303 349 IPR001841 -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 174 197 - -
Seca8g08036 1083 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08036 Seca-Chr8 177963435 177982497 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca8g08036 JmjC 6.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08036 K15601 - gmx:100805723 1251.5