Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08031 ATGGTGATGGTGGTGATGGAGGACAACGAAAGCTGCGGCAGCGGAGTGCAGCACCGCACGACGATGTCGTCTCCGGCGCAAAACCGGCAACAGCGGCAGAAGATGGAAGTGTACAATGAGATTCTTCGCCGGCTTAAGGATTCCGGCAACGAAGAGGCTATGCAACCTGGCTTCAACGATCAGCTTTGGACTCACTTCAACCGTCTTCCTACACGGTATGCGTTGGATGTGAATGTGGAAAGGGCGCAAGATGTTCTTATGCACAAGAGATTACTGTATCTGGCACATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGCTTAGTTCAGGTTCATCCCATATCTGACGGAAACTCAGCTGATTCTTTTCAAACAGATGCTCCTGGGATAGAATCTAGTGAAAGCTCTTCAAAGTACTCAAGCAGACAGAGTATACACCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAATAATTCTGAAGGCATAGAGGAGGATCGATCTGTACATGCCAGTGTACAATATTCACGGCCCATGCATGAAATCACCTTCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAGGCGCATGCCTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAGGCTAAAAGCAGCTTTGGAAAAAGAAGTCTTGAAGATTGAGTGCTTTCAGAGACAGGTGAGGTCGAATCAGCAATCAGTATCGTCTGTTGAGCAGCCTGACCAAGCAATGGTCAAACATGAACTGGATCATCTTGCAATTCCAAATGACGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGGATCTGGGTCATATGGTGATCTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAATTCTCAAGGCTGAACATGTAAATTCAGAAATGCAGAGAGAGTTCGCACAGGAAGTTTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCTCCACGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAGGGGTTTTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCAAATCTTTTGATGGATGAAAATGGTATTGTAAAGGTCGCTGATTTTGGGGTTGCCAGAGTGAAATCTCAATCTGGAGTTATGACAGCAGAAACTGGGACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAACCGTATGATCACAAGGCTGACGTATTCAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATATGAATATTTGACCCCTCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTCTACGGCCTACTATCCCCAAGAACACTCATCCAAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAACAAGATCCAACATTGAGACCTGATTTCTCTGAAATTATCGAGATCCTGCAGCAGATAACTAAGGAGGTTGGAGATGAAGGAGAGGAGCGGCGTAAGGATAAATCGGGAGGACTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1755 0.4399 MVMVVMEDNESCGSGVQHRTTMSSPAQNRQQRQKMEVYNEILRRLKDSGNEEAMQPGFNDQLWTHFNRLPTRYALDVNVERAQDVLMHKRLLYLAHDPANRPSIEVRLVQVHPISDGNSADSFQTDAPGIESSESSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEGIEEDRSVHASVQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETERLKAALEKEVLKIECFQRQVRSNQQSVSSVEQPDQAMVKHELDHLAIPNDGTDVWEIDPKHLKYGTQIGSGSYGDLFKGTYCSQEVAIKILKAEHVNSEMQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQRGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENGIVKVADFGVARVKSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIEILQQITKEVGDEGEERRKDKSGGLLSVLRRGHH. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08031 584 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 131 563 - -
Seca8g08031 584 SMART serkin_6 304 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08031 584 MobiDBLite consensus disorder prediction 115 150 - -
Seca8g08031 584 MobiDBLite consensus disorder prediction 13 33 - -
Seca8g08031 584 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g08031 584 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Seca8g08031 584 ProSiteProfiles ACT domain profile. 188 266 IPR002912 -
Seca8g08031 584 Gene3D - 186 257 - -
Seca8g08031 584 Coils Coil 28 48 - -
Seca8g08031 584 Gene3D Transferase(Phosphotransferase) domain 1 383 574 - -
Seca8g08031 584 MobiDBLite consensus disorder prediction 10 33 - -
Seca8g08031 584 SUPERFAMILY ACT-like 186 250 IPR045865 -
Seca8g08031 584 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
Seca8g08031 584 MobiDBLite consensus disorder prediction 560 584 - -
Seca8g08031 584 FunFam serine/threonine-protein kinase HT1 383 573 - -
Seca8g08031 584 CDD ACT_TyrKc 186 253 - -
Seca8g08031 584 CDD STKc_MAP3K-like 310 553 - -
Seca8g08031 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Seca8g08031 584 MobiDBLite consensus disorder prediction 560 577 - -
Seca8g08031 584 SUPERFAMILY Protein kinase-like (PK-like) 287 553 IPR011009 -
Seca8g08031 584 FunFam Serine/threonine-protein kinase isoform 1 294 382 - -
Seca8g08031 584 MobiDBLite consensus disorder prediction 115 155 - -
Seca8g08031 584 ProSitePatterns Protein kinases ATP-binding region signature. 310 331 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08031 Seca-Chr8 177879571 177888161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08031 7 583 MAP Kinase Kinase Kinase AT4G35780 66.090 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca8g08031 PK_Tyr_Ser-Thr 1.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08031 - - gmx:100805180 1026.93