Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08030 ATGCAATCAATTCGGAAATCCTTCAAATCTTATGGTTCCTACAATAAACATTCTAGAAGGTTTTCCGCCACCGGAAACCCAGATTCCGAGCACGAACACCTCCCTATCCTTCACGATCAAGAAACTCGTCATAGCAGCAGCCACTCTTATCCAATGGCTGGAGATGTTGTTGTTAAGATCGACGAAGGTGGTGAACCTACGCAGGGTAACAAAATTTGGAGAGAGTCTAGCTATGATTTCTGGCAAGATGGTGGTGACAATGGCGAAGAGAGCTTTGATTTTCGACAGAAGAATCCTGAAGACCCGCCGTCGCAGCTGATCGGAAAGTTTCTGCACAAACAGAGAGCCTCCGGCGAGATGGCACTCGACATGGATTTGGAAATGGAGGAGCTCCAGCATGACGGTGATGGCGATGGGAAGTTGACGCCGGTGGAGGAATCTCCGATGACACACCGGATATCCAGGGAGCTCAAGGTCTCGTTTGAGGAACCTGCTCCCAATGTGGTTGAGATGGCCAATGATCACGTCAGAAGAAGGCATAGCAAGGATTCGCCCTCGCTCGGAGAGTTTCAGAGGCCTCCTCATCCGCCGCATCATGACCGTCGCCGGTCTCCGTCTCCGGCCGGAAATGGCGGTGATGGTGAGGTTGTCAGGTGCACCTCTAACGCTTCTTTTGAAAGGAACCTTTCTATGCAGAGGAAGTCCATGTTGTTGAAAACCAAAACCAGGTCCAGATTGATGGACCCGCCCGAGGAACCCGAGAGGAAATCGGGTCGGGTCATGAAATCGGGGCAGCTTTTGTCCGGGTTTCTGGGAAAGAGGAGTGAGGATGAGGAGGATGATCCGTTTTTGGAAGAGGATCTTCCGGATGAGTATAAGAAAACCCAGTTTAGTTTATGGGTTCTGCTAGAGTGGTTGAGCTTGATTTTGATCATTGGTGCACTGATAACCACGCTTAGTATTCCAGTTCTGAGGGACAAGAATCTCTGGCAGCTCAGGTTGTGGAAATGGGAGGTAATGATTCTGGTTTTAATCTGTGGCAGGTTGGTTTCTGATTGGGTGATAAGGATTGTTGTTTTCTGCATTGAAAGGAATTTCCTTTTGAGGAAGAGGGTGCTGTATTTTGTGTATGGTGTGAGGAAGGCCGTTCAGAATTGTGTGTGGTTGGGTCTTGTTTTGATTGCATGGCATTTCTTGTTTGATAAGAAAGTTCAGAGGGAGACTAAGAGTGATTTCCTTCAATATGTCACCAAGGTCTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTAGGGAAAACTCTCGTGGTTAAGGTTCTGGCTTCTTCTTTCCATGTAAGCACCTACTTTGATAGGATTCAAGAGTCACTGTTTAATCAATTTGTGATTGAAACACTTTCGGGGCCACCCTTGGTTGAGCTTCAAAGGGCTGAAGAAGAGGAGGAAAGGCTCGCTGATGAGGTTAGGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGAGATTCTGCTTTCCCTACCATCAAGAGTGGAAAGTTGAAGAGTGGAATGCTCCAGAAAAGCCCCAGAATCAAAAGTGCCAAGTTTTCACGGCCACTCTCCAAGAAATCGGATGATGGGAATGGGATAACTATTGATCACCTGCATAAGCTGAATCCAAATAATGTCTCTGCCTGGAATATGAAAAGGTTGATGAATATGGTCCGGCATGGTGCTCTCTCTACACTGGATGAGCAGATACTTGAATCTTCTAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAATGAGGCTAAAGCAGCAGCAAAGAAAATATTTCAGAATGTTGCTAGGCGCGGATGCAGGTATATATACCCAGAGGATTTGATGCGTTTCATGCGAGAAGATGAAGCTGTAAAAACCTTAAATCTCTTTGAAGGAGCGACTGAATCTGGGAGAATAAGCAAATCAGCCTTGAAGAACTGGGTGGTAAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATTATCCTCATTATCTGGCTCTTGATATTGGAAATTGCCACCAGCAAATTCCTTCTTTTTGTGAGCTCACAGGTTGTTGTGGTTGCATTTATATTTGGAAACACCTGCAAGACCATATTTGAAGCAATCATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGACGGGGTCCAGGTAATGTTTATCTCTCAATAA 2292 0.4559 MQSIRKSFKSYGSYNKHSRRFSATGNPDSEHEHLPILHDQETRHSSSHSYPMAGDVVVKIDEGGEPTQGNKIWRESSYDFWQDGGDNGEESFDFRQKNPEDPPSQLIGKFLHKQRASGEMALDMDLEMEELQHDGDGDGKLTPVEESPMTHRISRELKVSFEEPAPNVVEMANDHVRRRHSKDSPSLGEFQRPPHPPHHDRRRSPSPAGNGGDGEVVRCTSNASFERNLSMQRKSMLLKTKTRSRLMDPPEEPERKSGRVMKSGQLLSGFLGKRSEDEEDDPFLEEDLPDEYKKTQFSLWVLLEWLSLILIIGALITTLSIPVLRDKNLWQLRLWKWEVMILVLICGRLVSDWVIRIVVFCIERNFLLRKRVLYFVYGVRKAVQNCVWLGLVLIAWHFLFDKKVQRETKSDFLQYVTKVLVCFLVGTLVWLGKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQRAEEEEERLADEVRKLQNAGVTIPPDLRDSAFPTIKSGKLKSGMLQKSPRIKSAKFSRPLSKKSDDGNGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALSTLDEQILESSNDDENATQIRSENEAKAAAKKIFQNVARRGCRYIYPEDLMRFMREDEAVKTLNLFEGATESGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILIIWLLILEIATSKFLLFVSSQVVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQVMFISQ. 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08030 763 MobiDBLite consensus disorder prediction 132 151 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 244 259 - -
Seca8g08030 763 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 37 759 IPR016688 -
Seca8g08030 763 MobiDBLite consensus disorder prediction 172 186 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 1 49 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 230 260 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g08030 763 PIRSF Memb_At2g17000 26 760 IPR016688 -
Seca8g08030 763 Coils Coil 471 494 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 164 218 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 23 45 - -
Seca8g08030 763 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08030 Seca-Chr8 177843160 177848114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08030 55 759 Mechanosensitive Ion Channel Family AT1G78610 56.933 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08030 K22048 - gmx:102665658 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08030 8 177843160 177848114 Seca8g08030 8 177843160 177848114 ECH