Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08018 ATGGGTGTGGCTCAGAACATTCAAGATATGGAGGAGGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCCGGAGTTGCTGGACCATTGGTCATTCTTGACAAGGTTAAGGGACCCAAATACCAAGAGATTGTTAACATTCGTTTAGGAGATGGAACTACTCGACGTGGACAAGTTTTAGAGGTTGATGGTGAAAAGGCAGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACAGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTCGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCGTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGCGAACTTATCCTGAGGAGATGATACAGACCGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCGGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAGGCTGGCCTGGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGTGGAGAAGAGGACAACTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATTCTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATCTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGACCTCACAGGATATATCACTGAGGGGCAGATATACATTGACAGGCAGCTGCATAATAGACAGGTGGGTTATGTTGGAGCTTTCGGCTGTAATGAATACTGTACACAATGTTGGATCAGAATGCATCCTAACATATACCCACCGATCAACGTCCTTCCTTCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATGCTGATGTGTCGAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTCTCGTCTGAGGACCTGCTGTATTTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTCACGCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTTCGGATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTATTATAGCCGAGATGCTGGTAATTGA 1536 0.4323 MGVAQNIQDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQVGYVGAFGCNEYCTQCWIRMHPNIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08018 511 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 365 IPR000194 GO:0005524
Seca8g08018 511 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Seca8g08018 511 ProSitePatterns ATP synthase alpha and beta subunits signature. 391 400 IPR020003 GO:0005524
Seca8g08018 511 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 366 IPR022879 -
Seca8g08018 511 Gene3D - 29 367 - -
Seca8g08018 511 Gene3D - 385 510 - -
Seca8g08018 511 PIRSF V-ATPsynth_beta/V-ATPase_B 383 511 IPR022879 -
Seca8g08018 511 PIRSF V-ATPsynth_beta/V-ATPase_B 11 369 IPR022879 -
Seca8g08018 511 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Seca8g08018 511 Hamap V-type ATP synthase beta chain [atpB]. 18 509 IPR022879 -
Seca8g08018 511 CDD V_A-ATPase_B 92 408 - -
Seca8g08018 511 CDD ATP-synt_V_A-type_beta_C 410 504 - -
Seca8g08018 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08018 Seca-Chr8 177747899 177757359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08018 1 511 Primary Pumps ATPases(2) AT4G38510 92.368 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08018 K02147 - gmx:100793764 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08018 8 177747899 177757359 Seca8g08018 8 177747899 177757359 ECH