Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g08010 | ATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGATCCACTGGACTTGTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCCCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTAGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAAGTCGGAGGAAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCAAGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGTACTGCATCAAGCATGGTTGGTGCCATTGGTAATTCTGTTGCCAACAACACAGGCCTTAATCTACCAGCAACAGGAAACATACAAGCAGATGCTCTTGTGGGAGCTGTGCCAGTGGGTTCTTCACTGGTTTCCCCTCTTTCTTCTGTTCCTGCAGTAGCTGGATTGCCAGGTGGAGGTCTCCAAGTTCCCACAGCCACAACTCCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGAAAGATGAGATGGAACCAGATTTCGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAATTTGGGAAGTTAAAACACATACATGTTGATAAGAAGAGTGCTGGTTTTGTGTACTTACGATTTGAAGATATTCAATCTGCAATAAGTGCACAGCGGTCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGACAGATTCCCAGACAGTAGATAA | 1083 | 0.4432 | MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGSTGLVGPYSGGARRLYVGNLHFNITEADLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGSRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLDRSGTASSMVGAIGNSVANNTGLNLPATGNIQADALVGAVPVGSSLVSPLSSVPAVAGLPGGGLQVPTATTPIDTIGVPSECLLLKNMFDPKDEMEPDFDLDIKEDVEAECSKFGKLKHIHVDKKSAGFVYLRFEDIQSAISAQRSLHGRWFAGKMITASFMVPQSYEDRFPDSR. | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g08010 | 360 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 359 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Seca8g08010 | 360 | NCBIfam | splicing factor, CC1-like family | 1 | 358 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Seca8g08010 | 360 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 290 | 342 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 143 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | FunFam | CC1-like, splicing factor | 67 | 175 | - | - | |
Seca8g08010 | 360 | SUPERFAMILY | RNA-binding domain, RBD | 262 | 346 | IPR035979 | GO:0003676 | |
Seca8g08010 | 360 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 149 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | FunFam | Splicing factor, CC1-like protein | 261 | 360 | - | - | |
Seca8g08010 | 360 | SUPERFAMILY | RNA-binding domain, RBD | 1 | 63 | IPR035979 | GO:0003676 | |
Seca8g08010 | 360 | SMART | rrm1_1 | 267 | 345 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | SMART | rrm1_1 | 73 | 145 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | Gene3D | - | 261 | 360 | IPR012677 | - | |
Seca8g08010 | 360 | CDD | RRM3_RBM39_like | 265 | 347 | - | - | |
Seca8g08010 | 360 | Gene3D | - | 1 | 54 | IPR012677 | - | |
Seca8g08010 | 360 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 266 | 349 | IPR000504 | GO:0003723 | |
Seca8g08010 | 360 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 163 | 284 | IPR029123 | - | |
Seca8g08010 | 360 | SUPERFAMILY | RNA-binding domain, RBD | 69 | 164 | IPR035979 | GO:0003676 | |
Seca8g08010 | 360 | Gene3D | - | 68 | 175 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g08010 | Seca-Chr8 | 177677150 | 177683735 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g08010 | 7 | 145 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 30.137 | 5.80e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g08010 | K13091 | - | gmx:100789839 | 608.601 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca8g08010 | 8 | 177677150 | 177683735 | Seca8g08010 | 8 | 177677150 | 177683735 | ECH |