Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08010 ATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGATCCACTGGACTTGTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCCCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTAGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAAGTCGGAGGAAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCAAGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGTACTGCATCAAGCATGGTTGGTGCCATTGGTAATTCTGTTGCCAACAACACAGGCCTTAATCTACCAGCAACAGGAAACATACAAGCAGATGCTCTTGTGGGAGCTGTGCCAGTGGGTTCTTCACTGGTTTCCCCTCTTTCTTCTGTTCCTGCAGTAGCTGGATTGCCAGGTGGAGGTCTCCAAGTTCCCACAGCCACAACTCCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGAAAGATGAGATGGAACCAGATTTCGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAATTTGGGAAGTTAAAACACATACATGTTGATAAGAAGAGTGCTGGTTTTGTGTACTTACGATTTGAAGATATTCAATCTGCAATAAGTGCACAGCGGTCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGACAGATTCCCAGACAGTAGATAA 1083 0.4432 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGSTGLVGPYSGGARRLYVGNLHFNITEADLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGSRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLDRSGTASSMVGAIGNSVANNTGLNLPATGNIQADALVGAVPVGSSLVSPLSSVPAVAGLPGGGLQVPTATTPIDTIGVPSECLLLKNMFDPKDEMEPDFDLDIKEDVEAECSKFGKLKHIHVDKKSAGFVYLRFEDIQSAISAQRSLHGRWFAGKMITASFMVPQSYEDRFPDSR. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08010 360 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 359 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca8g08010 360 NCBIfam splicing factor, CC1-like family 1 358 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca8g08010 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 342 IPR000504 GO:0003723
Seca8g08010 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Seca8g08010 360 FunFam CC1-like, splicing factor 67 175 - -
Seca8g08010 360 SUPERFAMILY RNA-binding domain, RBD 262 346 IPR035979 GO:0003676
Seca8g08010 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Seca8g08010 360 FunFam Splicing factor, CC1-like protein 261 360 - -
Seca8g08010 360 SUPERFAMILY RNA-binding domain, RBD 1 63 IPR035979 GO:0003676
Seca8g08010 360 SMART rrm1_1 267 345 IPR000504 GO:0003723
Seca8g08010 360 SMART rrm1_1 73 145 IPR000504 GO:0003723
Seca8g08010 360 Gene3D - 261 360 IPR012677 -
Seca8g08010 360 CDD RRM3_RBM39_like 265 347 - -
Seca8g08010 360 Gene3D - 1 54 IPR012677 -
Seca8g08010 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 349 IPR000504 GO:0003723
Seca8g08010 360 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 163 284 IPR029123 -
Seca8g08010 360 SUPERFAMILY RNA-binding domain, RBD 69 164 IPR035979 GO:0003676
Seca8g08010 360 Gene3D - 68 175 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08010 Seca-Chr8 177677150 177683735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08010 7 145 Eukaryotic Initiation Factors Gene Family AT4G34110 30.137 5.80e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08010 K13091 - gmx:100789839 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08010 8 177677150 177683735 Seca8g08010 8 177677150 177683735 ECH