Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08006 ATGAATGAAGACGAAGTTAATAGTGAAGATGTGTCTGAAGATGGTGAAGAAGAACATACAGAAAGTACTGGACCTGGCTCAAACGACAAAGATAATGAGATGAATAATAGTGAAGGTGAAGGGGAGTCTAGTGATGAAGATCGTAAACATGATTCCAATGATAGGAATGACATTCCCATTGAAAGTGAAGAGGAATTTGGAAATATTGACTTCAAGAGCTTAACATCGAGTGATCTAATGAAGTACCACTTTCCTGATCGTGAGGTTTCTTTCGATTTCTATAGTTGGTATGCCAGATTCCATGGCTTCGCTGCTCGGAAGGAAAGGACAGTGCATAATAAGAAGGATGAAGTAATTCGGCAAACATTTGTTTGCTATAGGGAAGGTGGAAAAATACCCGACCAAAGACCTTTGAAGCGTGCCCCTAGGAAGAAAACGAGGTGTGGATGTCTAGCTAGTTGTCAAGTGCCCATATGGTCTACTAATAACCGGTGGTATTTTAAAAAATTGTTAGAAGAACATAATCATATGTTGTTGGAAGAAAAGTATGTTGGGCTCCTGGCTTCTCATAGGAAGATGAGTGAAGATGATGTAGTCCAAATGATGAACATGCGAAAGGTGGGGATTAGGACTCCACACATATATGGTTCGTTTTCTAGCCAAATGGGAGGATATGAAAATGTTAGATTCAGGAAAAAGGACATGTACAATGAAATAGACAAGCTTAGGCGGAAGAAAGGGTCAGATGCGACAACTGCTTTGTCATACTTACAACGTTTGAAAAGGACTCATCAAGCATTGCATTGGAGGCACACTAGTGATGAGCATGGTAGGCTACAACACCTTTTCTGGTCTGAGGGACGATGCCAATATGATTATCATGTTGGAGATGTTTTGGCATTTGATGCCACTTACAAGAAGAACAGATATAGTTGTCCCATGGTAGTATTTTCCGGAGTTAATCATCATAACCAAACCATTGTTTTTGGGTGTGTTGTAGTATCGAATGAGACGGAAGAAATATATGTATGGGTGCTAGAACAATTTCTGCATGCAATGAAAGGGAAGGTGCCTATCTCAGTTATAATTGATGGTGACTTAGCTATGAGAAATGCAATTAGAAGAGTATTTGCTAATGCACACCATAGGTTATGTGCATGGCACCTTTTACGGAATGCTTCAAGCAATGTTCACAACACTCGCTTCACCCAGTTGTTTGAGGAATGCATGCTTGGGGATTATGACATTAGCTAG 1254 0.4011 MNEDEVNSEDVSEDGEEEHTESTGPGSNDKDNEMNNSEGEGESSDEDRKHDSNDRNDIPIESEEEFGNIDFKSLTSSDLMKYHFPDREVSFDFYSWYARFHGFAARKERTVHNKKDEVIRQTFVCYREGGKIPDQRPLKRAPRKKTRCGCLASCQVPIWSTNNRWYFKKLLEEHNHMLLEEKYVGLLASHRKMSEDDVVQMMNMRKVGIRTPHIYGSFSSQMGGYENVRFRKKDMYNEIDKLRRKKGSDATTALSYLQRLKRTHQALHWRHTSDEHGRLQHLFWSEGRCQYDYHVGDVLAFDATYKKNRYSCPMVVFSGVNHHNQTIVFGCVVVSNETEEIYVWVLEQFLHAMKGKVPISVIIDGDLAMRNAIRRVFANAHHRLCAWHLLRNASSNVHNTRFTQLFEECMLGDYDIS. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08006 417 MobiDBLite consensus disorder prediction 33 64 - -
Seca8g08006 417 Pfam MULE transposase domain 298 392 IPR018289 -
Seca8g08006 417 PANTHER OS01G0519700 PROTEIN 82 401 - -
Seca8g08006 417 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g08006 417 MobiDBLite consensus disorder prediction 1 64 - -
Seca8g08006 417 Coils Coil 225 245 - -
Seca8g08006 417 Pfam FAR1 DNA-binding domain 92 179 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08006 Seca-Chr8 177653088 177654341 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g08006 MULE 3.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08006 - - tpra:123905832 434.491