Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07994 ATGAACATCATTATGCAAAATTTAACTGAGAGGCTAAGACCCCTTGTTGGTTTGAATGGTTGGGACTACTGTGTCAACTGGAAATTGAGTGAAGACCAGAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAACAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCAATGGCTCCATGCAGAGATACCATGTTTCCACACCCCAGAATAAAGGCCTGTGATCTTCTTTCCCAGCTTAACACTTCAATCCCCATAGATTCTGGGATTCATGCTCAGACCCTATTGACAAACCAACCAAATTGGTTCAACTATTCCAATAGCTTGGATCCGAACACTTTAGAAGAAACAATTGGGACCCAGGTTTTGATTCCGGTGCCAGGTGGACTAATTGAGCTATTTGTAACTAAACAGGTGCCTGAAGATCATCAGGTAATAGATTTTGTCACAACCCAGTGCATTTCCTTGATGGAGCAGGAAGCAGTGAACCACTCAATAAGCTTCAATATTGATGTAAATTCAATGGGCAACATGCAATCAAATCAACTTCTAGGTGATGAAAATGAAGGGAATAACAAGAACAATCATTTTCAGCCATCAGAGACTTCAAGTCTCCCTCATGACATCTCTTTAGACCGCATTGGTCTCTGCAGTTCTCCACTGAACTTCATGCAGCAATTCAATTACAACCAACAACAGAACAGAATGAAAAATGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCAAAATGACCCTCTCAAATCCACCCCAGAAGAGGATCATGATAAATGCTTGATGATGGATACACAATATGTGGAACCTTTTGACACCAAGGAAAAGCAAGGACAAGTTGTTGGTCGTTCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTATAGGAGAAGGAATGGGAAAGGAAACCAATCAAAAAACCTTGTAGCAGAGAGGAAGAGAAGGAAGAAACTCAATGACAGGCTATATAACCTTCGTTCCTTGGTTCCAAGAATCTCAAAGCTAGATAGAGCTTCTATTCTTGGGGATGCCATTGAGTATGTGAAGGATTTGCAGAAACAAGTGAAAGAGCTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGCAATAATCAATATGTGGGTGTCCAACCAGATATCCCAAAAGCAGAACATGGTAAGCATGTGGGGACATCAGGGAATGGCTATATGTCAAAACAAAAACAGGAAGATGCTACTGCCATTGACAAACAGACACAGCAAATGGAGCCTCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTAGTGGATTTGTGAAATTGATGGAGGCATTTAGCACTCTGGGTATGGATGTAGTACATGCCACAGTAACCAGCCATAAGGGACTAGTGTCAAATGTATTCAAAGTGGAGAAAAGGGACAGTGAAATGGTTGAGGCTGAAGATGTAAGAGAGTCACTACTAGAGCTTACAAGGAACCGATCAAGAGGGTGGACTCATGAGATGACAGCATCATCAGAAAATGGTGTGGGGAGGGATCAACATCACCTTCACAACCACCAGATTGGAGCCTATCATCATCCACAACAATTTCATAGTTAA 1701 0.4203 MNIIMQNLTERLRPLVGLNGWDYCVNWKLSEDQRFLEWLGCCCAGTENNQNAGEEHLFPVSSMAPCRDTMFPHPRIKACDLLSQLNTSIPIDSGIHAQTLLTNQPNWFNYSNSLDPNTLEETIGTQVLIPVPGGLIELFVTKQVPEDHQVIDFVTTQCISLMEQEAVNHSISFNIDVNSMGNMQSNQLLGDENEGNNKNNHFQPSETSSLPHDISLDRIGLCSSPLNFMQQFNYNQQQNRMKNDAFSEEYQGSFLHDKQNDPLKSTPEEDHDKCLMMDTQYVEPFDTKEKQGQVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENSDTGAESNCINGNNQYVGVQPDIPKAEHGKHVGTSGNGYMSKQKQEDATAIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPSGFVKLMEAFSTLGMDVVHATVTSHKGLVSNVFKVEKRDSEMVEAEDVRESLLELTRNRSRGWTHEMTASSENGVGRDQHHLHNHQIGAYHHPQQFHS. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07994 566 Coils Coil 362 389 - -
Seca8g07994 566 CDD bHLH_AtAMS_like 326 396 - -
Seca8g07994 566 Pfam Helix-loop-helix DNA-binding domain 330 373 IPR011598 GO:0046983
Seca8g07994 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 386 IPR036638 GO:0046983
Seca8g07994 566 MobiDBLite consensus disorder prediction 254 273 - -
Seca8g07994 566 Gene3D - 312 388 IPR036638 GO:0046983
Seca8g07994 566 MobiDBLite consensus disorder prediction 283 335 - -
Seca8g07994 566 MobiDBLite consensus disorder prediction 186 210 - -
Seca8g07994 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Seca8g07994 566 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 209 525 - -
Seca8g07994 566 CDD ACT_UUR-ACR-like 460 523 - -
Seca8g07994 566 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Seca8g07994 566 SMART finulus 329 378 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07994 Seca-Chr8 177537089 177540330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07994 5 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.764 1.81e-151 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07994 bHLH-MYC_N 2.6e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07994 - - gmx:100798282 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07994 8 177537089 177540330 Seca8g07994 8 177537089 177540330 ECH