Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07987 ATGGAATTCATGAGAAAATATGTGATTGATGGGGTAACTGATGTGAAGCTGCGAGATGGGGAGAGATTATGGCCTGTGAAGCTAAACTATTCTTCAGAGTCATCCTATGGAGTATTCGCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGGCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTGGTTATTCATGTTAGAGTTCTTTTAAGGCGCATTGACTGA 243 0.4198 MEFMRKYVIDGVTDVKLRDGERLWPVKLNYSSESSYGVFAAGWSAFVRDCNLKAGDVCLFELVDEQNLVIHVRVLLRRID. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07987 80 Pfam B3 DNA binding domain 2 73 IPR003340 GO:0003677
Seca8g07987 80 Gene3D - 1 77 IPR015300 -
Seca8g07987 80 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Seca8g07987 80 CDD B3_DNA 2 75 IPR003340 GO:0003677
Seca8g07987 80 SUPERFAMILY DNA-binding pseudobarrel domain 2 74 IPR015300 -
Seca8g07987 80 SMART B3_2 1 78 IPR003340 GO:0003677
Seca8g07987 80 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 71 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07987 Seca-Chr8 177490105 177490347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07987 3 75 REM Transcription Factor Family AT1G49480 35.135 3.10e-09 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g07987 B3 2.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07987 - - aprc:113871918 85.8853