Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07983 ATGTCGAATCCTGTACACTTTCTCCTCCCTGATGGTGCTAAATGGGAAGTGACTTGGAAAAAACGTGATGCTGAAGTGGTTTGGTTAGGCAATAATTGGAAGAAATTTGCAAAATTTTATTCTTTGGATCATCAACATCTTTTGATGTTCAAATACGAAAGGAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTTTCTTGGAAATAGGGTACCCTGTGTTCATTGGAACCTTTGGCGTTGAAGAGATCAGTGATCTGAGTGGCAACTCGAGAGAAATGTTTGATGGTTCTTCAACTCCCCGAAATAAAAGGCCAAATTCTTCTCCTCAAACTGATAGAATCCCTGAAATGAAAACCTTCCATGAAGGTTTTGAATTTGATACTACTAAGCCAAAATGTACAGGTAAAAGACAAAACATGATGGGGTTTAAGGCTATTGAAAGTGAAGAGCCGTTACTAAATACTAAAAGTAGCAATGCATTGAAGAAAGCCCATGCATATCCCACTGAGAACCCCTCCTTCATTCGTCAAATGCACATATCACACATTCAAACAAATTTTCTGCCACTACCTCGCAGGTTTTTAACAGCAAGTGAACAACAGATGGAGAGTGTTACTCTTTGGGTTTCTGAGGAGAGAACTTGGGATGTTAAATTAAATGTGAATCATTCCAATGGACAAACATCGCTTAGAACTGGTTGGAGGAATTTTGCAAAGGAAAATCATTTGGAACTTGGTGATGTTTGTTTTTTTGAGAAAATTAAATCAGCAGGAGTTTCATTTAGAGTTGTTATTTTTCGTGACCGAGAAGAATTAAGCCCTCCCCGGTTTGTAATCCGAAAGAGACGGACAGGGGCTCAAAGCAACATCCCTCAACAGGAAGGGGTTGATGGAAATGCCCAAAAGTTAACAACAACTAATATCATACCGATGGAATTCATGAGAAAATATGTGATTGATGGGGTAACTGATGTGAAGCTGCGAGATGGGGAGAGATTATGGCCTGTGAAGCTAAACTATTCTTCAGAGTCATCCTATGGAGTATTCGCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGGCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTGGTTATTCATGTTAGAGTTCTTTTAAGGCGCATTGACTGA 1176 0.3963 MSNPVHFLLPDGAKWEVTWKKRDAEVVWLGNNWKKFAKFYSLDHQHLLMFKYERKSQFQVVICDQSFLEIGYPVFIGTFGVEEISDLSGNSREMFDGSSTPRNKRPNSSPQTDRIPEMKTFHEGFEFDTTKPKCTGKRQNMMGFKAIESEEPLLNTKSSNALKKAHAYPTENPSFIRQMHISHIQTNFLPLPRRFLTASEQQMESVTLWVSEERTWDVKLNVNHSNGQTSLRTGWRNFAKENHLELGDVCFFEKIKSAGVSFRVVIFRDREELSPPRFVIRKRRTGAQSNIPQQEGVDGNAQKLTTTNIIPMEFMRKYVIDGVTDVKLRDGERLWPVKLNYSSESSYGVFAAGWSAFVRDCNLKAGDVCLFELVDEQNLVIHVRVLLRRID. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07983 391 Gene3D - 295 388 IPR015300 -
Seca8g07983 391 Gene3D - 153 272 IPR015300 -
Seca8g07983 391 ProSiteProfiles B3 DNA-binding domain profile. 1 66 IPR003340 GO:0003677
Seca8g07983 391 MobiDBLite consensus disorder prediction 90 117 - -
Seca8g07983 391 MobiDBLite consensus disorder prediction 91 115 - -
Seca8g07983 391 CDD B3_DNA 2 64 IPR003340 GO:0003677
Seca8g07983 391 Gene3D - 1 67 IPR015300 -
Seca8g07983 391 SUPERFAMILY DNA-binding pseudobarrel domain 309 385 IPR015300 -
Seca8g07983 391 Pfam B3 DNA binding domain 178 268 IPR003340 GO:0003677
Seca8g07983 391 Pfam B3 DNA binding domain 309 384 IPR003340 GO:0003677
Seca8g07983 391 CDD B3_DNA 309 386 IPR003340 GO:0003677
Seca8g07983 391 PANTHER B3 DOMAIN-CONTAINING 324 377 - -
Seca8g07983 391 SUPERFAMILY DNA-binding pseudobarrel domain 168 268 IPR015300 -
Seca8g07983 391 SMART B3_2 301 389 IPR003340 GO:0003677
Seca8g07983 391 SMART B3_2 175 270 IPR003340 GO:0003677
Seca8g07983 391 CDD B3_DNA 173 268 IPR003340 GO:0003677
Seca8g07983 391 ProSiteProfiles B3 DNA-binding domain profile. 309 389 IPR003340 GO:0003677
Seca8g07983 391 SUPERFAMILY DNA-binding pseudobarrel domain 4 65 IPR015300 -
Seca8g07983 391 ProSiteProfiles B3 DNA-binding domain profile. 174 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07983 Seca-Chr8 177474497 177476465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07983 310 383 B3 DNA Binding Superfamily AT3G18990 33.784 2.53e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g07983 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07983 - - aprc:113871918 307.76