Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07982 ATGTCTTCTTCTTCTCAAGGCCGTGCCTCTGCCGTTCACTTCTTCAAGATCATTGATGAAAACTGCCTTCGAAGTGGAGACCTCAGGATTCCTCGGCGTTTTGTGAGTAATTATTGGGAAGGAATGTCAAACCCTCTAAACTTTTTGCTTCCTGACGGTGCTAAATGGGAAGTGACTTGGGAAAAACGTGGGGATGATGTATGGTTAGGGAATAACTGGAAGAAATTTGCATCATTTTATTCTCTGGATCATGAGCATCTTTTGATGTTCAAATACCAACGAAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTGGCTTGGAAATTGGGTACCCTGTGTTTAAAGGAACTTTTGATGCTCAAGAGATCAGTGATCAGAGTGGTAACTCTCTAGAAATGTTTGATGGTTTTCCCAATAAGAGGCCAAAATCTCCATTACCATTTTCTAATTCTTCTAAGAAGATGAAAACCAACCCAAAAGAGGATCCTAAATGGCATTCCAGCCAACGTGTGCAAACTGATATAGTTCAACCTCGGAGGACAGAGCTTGAGATCAAAAGATCCCATTCAGCTTTTGACAATACAAAGCCCAAAAGTAGAGGTAGAAAACGAAACATGAGGAGAAGCTCAAAATCTGAGGCCACTGAAAGTAAGAAGCCGTTACTAAATACTGCAAGTAGCAGTGCGTTGGAGAGAGCCAAGGCTTACTGCACTACGAACCCCTCCTTCATTCGTGAGATGCGACGATCACATGTTGAAAGACATATTATGCCACTACCAGGCAACTTTTTAACAGCATGTCAGCAAAAGGAGGAAGATAGTGCTACTCTTCGGGTTTCTGAGAGAACTTGGGATGCTAAGTTACATCTGAATCGTTGCAATGGACAAATAACACTTAGTAGTGGTTGGAAGAATTTTGTAGAGGACAATAATTTGAAACTCGGTGATGTTTGTGTTTTTGAGCAAATTAAGTCAGAAGGAGTTTCATTTAAAGTTGTTATTTTTCATGCCAGAGAAGAATCAAGCCCTCCCGGGTTTCAAGCTTATGAGGCTGGAGCAAACCGAAGTAAACTGACAGGGGTTCAAAGTAACTTTGCTCAAAGGGAAGGGGTTGGAGGAATTGCAAAGAAGTTCCCAAGAACCAATAATATCTTTGATGGTTCTGAGTTTCCTAGAAATAACAGCACAATGTCAGAGAATCAGTTCACCCTCTCTTTAAAGCCTAATCAATTGAGTCATGCAGTAGGTAAAATCATACCAATGAAATTCATCAGAAAATATGTCATTAATGAGGTAACTGATGTGAAGCTGCGAGTTGGGGAGAGATCATGGCCTGTAAAGCTATATTATTATTCAAAGCCATGCTATGGAAGATTCTCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGCCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTTGTGCTTCAAGTTAGTATTAAGGCATGTTAA 1497 0.4061 MSSSSQGRASAVHFFKIIDENCLRSGDLRIPRRFVSNYWEGMSNPLNFLLPDGAKWEVTWEKRGDDVWLGNNWKKFASFYSLDHEHLLMFKYQRKSQFQVVICDQSGLEIGYPVFKGTFDAQEISDQSGNSLEMFDGFPNKRPKSPLPFSNSSKKMKTNPKEDPKWHSSQRVQTDIVQPRRTELEIKRSHSAFDNTKPKSRGRKRNMRRSSKSEATESKKPLLNTASSSALERAKAYCTTNPSFIREMRRSHVERHIMPLPGNFLTACQQKEEDSATLRVSERTWDAKLHLNRCNGQITLSSGWKNFVEDNNLKLGDVCVFEQIKSEGVSFKVVIFHAREESSPPGFQAYEAGANRSKLTGVQSNFAQREGVGGIAKKFPRTNNIFDGSEFPRNNSTMSENQFTLSLKPNQLSHAVGKIIPMKFIRKYVINEVTDVKLRVGERSWPVKLYYYSKPCYGRFSAGWSAFVRDCNLKPGDVCLFELVDEQNFVLQVSIKAC. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07982 498 Gene3D - 6 107 IPR015300 -
Seca8g07982 498 ProSiteProfiles B3 DNA-binding domain profile. 403 497 IPR003340 GO:0003677
Seca8g07982 498 Pfam B3 DNA binding domain 244 337 IPR003340 GO:0003677
Seca8g07982 498 Pfam B3 DNA binding domain 407 495 IPR003340 GO:0003677
Seca8g07982 498 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Seca8g07982 498 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Seca8g07982 498 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Seca8g07982 498 MobiDBLite consensus disorder prediction 178 200 - -
Seca8g07982 498 CDD B3_DNA 13 104 IPR003340 GO:0003677
Seca8g07982 498 SUPERFAMILY DNA-binding pseudobarrel domain 402 495 IPR015300 -
Seca8g07982 498 ProSiteProfiles B3 DNA-binding domain profile. 243 339 IPR003340 GO:0003677
Seca8g07982 498 SUPERFAMILY DNA-binding pseudobarrel domain 239 337 IPR015300 -
Seca8g07982 498 SMART B3_2 403 497 IPR003340 GO:0003677
Seca8g07982 498 SMART B3_2 14 106 IPR003340 GO:0003677
Seca8g07982 498 SMART B3_2 244 339 IPR003340 GO:0003677
Seca8g07982 498 CDD B3_DNA 403 495 IPR003340 GO:0003677
Seca8g07982 498 MobiDBLite consensus disorder prediction 130 226 - -
Seca8g07982 498 Gene3D - 223 341 IPR015300 -
Seca8g07982 498 Gene3D - 389 497 IPR015300 -
Seca8g07982 498 PANTHER B3 DOMAIN-CONTAINING 254 487 - -
Seca8g07982 498 CDD B3_DNA 242 336 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07982 Seca-Chr8 177467268 177469693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07982 403 494 B3 DNA Binding Superfamily AT3G18990 35.870 2.50e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g07982 B3 2.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07982 - - aprc:113871918 442.58