Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07979 ATGGCGGAACAGACGGAGAAAGCTTTCCTGAAGCAACCCAAGGTTTTTCTCTGCTCGAAGAAATCCGGGAAGGGGAAGAGGCCTGGAAAAGGAGGGAACAGGTTTTGGAAGAGTATTGGATTGGGATTCAAGACTCCCAGAGATGCAATTGAAGGGACTTACATTGATAAGAAATGCCCATTCACTGGCACTGTTTCCGTCCGTGGTCGCATTCTTGCTGGCACTTGCCATAGTGCCAAAATGACAAGGACTATCATTGTCCGGCGTAACTATCTTCATTTTATCAAGAAATACCAAAGGTACGAGAAGAGGCACTCAAATATTCCAGCACATATATCTCCATGTTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGGCAGTGCAGGTTGCCATTGTCAAAGACAGTGAGATTTAACGTGTTAAAAGTGATTCCTGCTGGGTCATCTGGAGCTGTTAAGAAAGCTTTTACTGGAATATGA 483 0.4431 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLPLSKTVRFNVLKVIPAGSSGAVKKAFTGI. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07979 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca8g07979 160 PRINTS Ribosomal protein S17 family signature 132 139 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca8g07979 160 FunFam 40S ribosomal protein S11 1 159 - -
Seca8g07979 160 Pfam Ribosomal protein S17 74 143 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca8g07979 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca8g07979 160 NCBIfam 30S ribosomal protein S17 55 144 IPR028333 -
Seca8g07979 160 Gene3D - 1 159 - -
Seca8g07979 160 SUPERFAMILY Nucleic acid-binding proteins 68 148 IPR012340 -
Seca8g07979 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07979 Seca-Chr8 177453831 177455578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07979 1 160 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.375 8.79e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07979 K02949 - gmx:100500186 300.827