Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07977 ATGGCTACTCATCCTCCCAGTGGCAGAGGAAATGGAAATGCTATTCTGCCTGTCCGTTTCTTCAAGATTATTCTTAAAACTAATCTTCAAAGGCTTAAAATACCCAATGTGTTTACAAGGAAATATGGAGGTGATCTGTCAAATCCTGTGTTTGTCAAGCCTCCTGATGGCACTAAATGGGAAATAGAGTGGACAAAACAGAATGGTGAGGTTTGGTTTGAAAAAGGTTGGAAAGAATTTGCTGAAAAATATTCTCTAGATCATGGGTATTTGGTGTTGTTTATATATAAAGGAACTTCCCAGTTTGATGTACTAATACTTAACCAGAGTGCTGTAGAAATAGATTATCCTTTACAAGACACTTTTGATGATCAGAGTGATGATGATAAATCAATTGAAATTTTGGATGAATGGCCACGTCAGAAGGCTATACACATGAGGCCATTAATTTCTCCTAGACCTCATAAGAAAATGAGAGGTGATAAGGCTAATCAAAGAACTTCATCATTGAATTGGCCAAGCAATGCTAGAGCTAGGGAAGTAGCTGAAAATTTCGTCTCTAACAATCCTTTTTTCACAATTCCCATAAAGGCTGTCCATGTGGCAGAAAATCCGTTGTATGTACCAGATTTGAAAGGTGTTGTTGGAAGCGAGGATAAGTATGTTATGCTGCAGATAGGGAAAAGATCATGGGATGTGAAGTTGGTTGGTGGTCCAAATGGAGGTCGCAGATTCTCTGCTGGTTGGTCTGTGTTTGCAATGGAAAGTGAGTTGCAACCAGGAGACGTTTGTGTCTTTGAACTCATAAACACACAAGATTCAATTTTTAAGGTAGATCAGATCAGACTTGCTGGCCTTATCGATGGCTGTGACAGAATAAACTCTATAATTACTCCAACAAACTCAGAAAGAATGAACTCCACAGGAAGGAACAAATTCTTGTGTCTCGTGACTCTCAAGTTGAGTAAGAATTGTTTTGGTACTGGGCATGAAGTGACAGTCACTAACTTTTCAACTTCAAATTCCATCCATCCATCCATGGCTACTACTTTTCTTCCCGGGCGAAATGCCAATTTGCCTATCCATTTCTTCAAGATTATTCTTGAAACAAATGTTGAAAGGCTTAAAATACCCAACAAGTTTACAAAGAGGCATGAAGGTGGTTTCTCAAATCCTGTTTTTATCAAGCCTCCTGATGGTACTGAATGGGAAGTGTATTGGACAAAACAGAATGATGAGATTTGGTTCGAAAAGGGTTGGAAAGAATTTGCTGAAAATTACTCCCTAAATCACGGACATTTGGTGTTGTTCAAATATGAAGGAACTTCCCAGTTTGATGTACTCATACTTGACCAAAGTGCTGTAGAAATAGACTATCCTTCCAATGACACACCAGTTGAAGATGACAACCTTGATCACCACAGTGATGATGAATCAATTAGAATCTTGGAGGGAATCCCTCCAAACCTAAAGGCTAGACCAAAGTCACCATTGTCTTCTCCTCAATCTCATAAGAAAATGAGAAATAATGCTGTTACACATGGGAATGTGGAAAGTAACTCCAATAAGCGAAAGTTGCATGCAGGTGATCAATCTGATCCTGATCAAGGGAAAAAGTTTCAGAAAACTAGCAAACATGAACTGAAAGATGTTGAGAAGACTACTGAAAGAAACTTGTCGTTGAATACTCCTAGGACACTTAAAGCTCAGGAAATAGCCAAAAAATTCTCCACAGGCAATCCGTTTTTCACCGTGGACATAAAGCAATCTCATCTGGAAAAGAAGGCAGTGAAGCATGTACCAAAGTTCCTAGATTGTGAGGGCAAGGAGCATTATGCGAGGATGCAGCTTGGCGAAAGATGGTGGACAGTGAAGTTGGTGCGTTATCCTAATATGCAATATGATCGACTCACCTCTGGTTGGTCTTTGTTTGCAACAGAGAGTAAATTGGAAGTTGGAAACGTTGTTATCTTTGAGGTGGTTGATAGACAAGTTCCAGTGTTAAAAGTCCATGTCTTCGATTAG 2025 0.3936 MATHPPSGRGNGNAILPVRFFKIILKTNLQRLKIPNVFTRKYGGDLSNPVFVKPPDGTKWEIEWTKQNGEVWFEKGWKEFAEKYSLDHGYLVLFIYKGTSQFDVLILNQSAVEIDYPLQDTFDDQSDDDKSIEILDEWPRQKAIHMRPLISPRPHKKMRGDKANQRTSSLNWPSNARAREVAENFVSNNPFFTIPIKAVHVAENPLYVPDLKGVVGSEDKYVMLQIGKRSWDVKLVGGPNGGRRFSAGWSVFAMESELQPGDVCVFELINTQDSIFKVDQIRLAGLIDGCDRINSIITPTNSERMNSTGRNKFLCLVTLKLSKNCFGTGHEVTVTNFSTSNSIHPSMATTFLPGRNANLPIHFFKIILETNVERLKIPNKFTKRHEGGFSNPVFIKPPDGTEWEVYWTKQNDEIWFEKGWKEFAENYSLNHGHLVLFKYEGTSQFDVLILDQSAVEIDYPSNDTPVEDDNLDHHSDDESIRILEGIPPNLKARPKSPLSSPQSHKKMRNNAVTHGNVESNSNKRKLHAGDQSDPDQGKKFQKTSKHELKDVEKTTERNLSLNTPRTLKAQEIAKKFSTGNPFFTVDIKQSHLEKKAVKHVPKFLDCEGKEHYARMQLGERWWTVKLVRYPNMQYDRLTSGWSLFATESKLEVGNVVIFEVVDRQVPVLKVHVFD. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07977 674 MobiDBLite consensus disorder prediction 484 562 - -
Seca8g07977 674 ProSiteProfiles B3 DNA-binding domain profile. 622 674 IPR003340 GO:0003677
Seca8g07977 674 ProSiteProfiles B3 DNA-binding domain profile. 229 284 IPR003340 GO:0003677
Seca8g07977 674 MobiDBLite consensus disorder prediction 520 556 - -
Seca8g07977 674 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Seca8g07977 674 CDD B3_DNA 602 674 IPR003340 GO:0003677
Seca8g07977 674 CDD B3_DNA 222 278 IPR003340 GO:0003677
Seca8g07977 674 SUPERFAMILY DNA-binding pseudobarrel domain 187 282 IPR015300 -
Seca8g07977 674 PANTHER B3 DOMAIN-CONTAINING 361 670 - -
Seca8g07977 674 SUPERFAMILY DNA-binding pseudobarrel domain 19 117 IPR015300 -
Seca8g07977 674 CDD B3_DNA 19 108 IPR003340 GO:0003677
Seca8g07977 674 Gene3D - 17 111 IPR015300 -
Seca8g07977 674 Gene3D - 358 454 IPR015300 -
Seca8g07977 674 SMART B3_2 192 279 IPR003340 GO:0003677
Seca8g07977 674 SMART B3_2 20 110 IPR003340 GO:0003677
Seca8g07977 674 SMART B3_2 363 453 IPR003340 GO:0003677
Seca8g07977 674 SMART B3_2 582 674 IPR003340 GO:0003677
Seca8g07977 674 ProSiteProfiles B3 DNA-binding domain profile. 360 453 IPR003340 GO:0003677
Seca8g07977 674 Gene3D - 564 674 IPR015300 -
Seca8g07977 674 Gene3D - 173 284 IPR015300 -
Seca8g07977 674 SUPERFAMILY DNA-binding pseudobarrel domain 361 460 IPR015300 -
Seca8g07977 674 MobiDBLite consensus disorder prediction 495 519 - -
Seca8g07977 674 CDD B3_DNA 362 451 IPR003340 GO:0003677
Seca8g07977 674 Pfam B3 DNA binding domain 373 449 IPR003340 GO:0003677
Seca8g07977 674 Pfam B3 DNA binding domain 27 105 IPR003340 GO:0003677
Seca8g07977 674 Pfam B3 DNA binding domain 204 274 IPR003340 GO:0003677
Seca8g07977 674 SUPERFAMILY DNA-binding pseudobarrel domain 576 674 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07977 Seca-Chr8 177430330 177436033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07977 359 673 B3 DNA Binding Superfamily AT3G18990 27.401 3.06e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g07977 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07977 - - aprc:113871917 334.339