Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07976 ATGGTTGGAAGTACTGCTATTCTGCCAATGATCCGTTTCTTCAAGATTATTCTAAAAACTAATCTTGAAAGGCTTAAAATACCTAATATGTTTACAAGGAGATATGGAGGCAACCTCTCAGATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGGATGGAAAATAGAGTTGGTAAAACAGAACGGTGAGGTTTGGTTTGGAAAGGGTTGGGAAAAATTTGCTCAAAATTACTCTCTGGATCATGGATATTTGGTGCTGTTTACATATAAAGGAACTTGCCAGTTTGATGTAGTTATACTTGGCAAGAGTGCTCTAGAAATAGATTATCCTCTGTGTAACACTTTTGATCAGGATCAGAGTGTTGATGATGAATCAGTTGAAATTTTGGATGAATTGCCAAATAAGGATGCTGAGGCTGGACAGAAGCCATTTTATTCTCATAAGAAAATGAGAGTCACAGGTGAGAATGAGATTGAGAAAGCTACTCAAAGAACTTCATCGTTGAATTGGCCAAGGGATGCTAGAGCTCAGGAAGTAGCTGAAAAATTCGACTCAAACAATCCTTTTTTCACGGTTTGCATAAAGTCTATTGTTCTGAAAAAATGTAGGGTGAGTGTACCAAAATTATTACAAGGTTATATTGAGAAGAAGAATGAGTATGTGACTCTGCAGATTGGGAAAAGATCATGGAATGTGAAGTTGCTCTGTCGTCATGGCCATACAGGCCATCTCTCTGCTGGTTGGTCTGTGTTTGCAAAGGAAAGTGAATTGCAACCAGGGGACGTTTGTGTCTTTGAACTCATAAATAGTGAAGATTTAGTTTTTAAAGTGCATGTTTTCAAACGCCACAGTTTGGAGTATGAAAATTTGAACAATTAG 879 0.38 MVGSTAILPMIRFFKIILKTNLERLKIPNMFTRRYGGNLSDPVFLKPPDGTGWKIELVKQNGEVWFGKGWEKFAQNYSLDHGYLVLFTYKGTCQFDVVILGKSALEIDYPLCNTFDQDQSVDDESVEILDELPNKDAEAGQKPFYSHKKMRVTGENEIEKATQRTSSLNWPRDARAQEVAEKFDSNNPFFTVCIKSIVLKKCRVSVPKLLQGYIEKKNEYVTLQIGKRSWNVKLLCRHGHTGHLSAGWSVFAKESELQPGDVCVFELINSEDLVFKVHVFKRHSLEYENLNN. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07976 292 CDD B3_DNA 189 281 IPR003340 GO:0003677
Seca8g07976 292 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Seca8g07976 292 ProSiteProfiles B3 DNA-binding domain profile. 189 283 IPR003340 GO:0003677
Seca8g07976 292 Pfam B3 DNA binding domain 20 98 IPR003340 GO:0003677
Seca8g07976 292 Pfam B3 DNA binding domain 189 282 IPR003340 GO:0003677
Seca8g07976 292 PANTHER B3 DOMAIN-CONTAINING 12 278 - -
Seca8g07976 292 Gene3D - 171 284 IPR015300 -
Seca8g07976 292 SUPERFAMILY DNA-binding pseudobarrel domain 183 282 IPR015300 -
Seca8g07976 292 CDD B3_DNA 12 100 IPR003340 GO:0003677
Seca8g07976 292 Gene3D - 10 104 IPR015300 -
Seca8g07976 292 SMART B3_2 13 103 IPR003340 GO:0003677
Seca8g07976 292 SMART B3_2 189 283 IPR003340 GO:0003677
Seca8g07976 292 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07976 Seca-Chr8 177428167 177429603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07976 8 285 B3 DNA Binding Superfamily AT3G18990 26.100 6.93e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g07976 B3 1.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07976 - - gmx:102661781 299.286