Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g07976 | ATGGTTGGAAGTACTGCTATTCTGCCAATGATCCGTTTCTTCAAGATTATTCTAAAAACTAATCTTGAAAGGCTTAAAATACCTAATATGTTTACAAGGAGATATGGAGGCAACCTCTCAGATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGGATGGAAAATAGAGTTGGTAAAACAGAACGGTGAGGTTTGGTTTGGAAAGGGTTGGGAAAAATTTGCTCAAAATTACTCTCTGGATCATGGATATTTGGTGCTGTTTACATATAAAGGAACTTGCCAGTTTGATGTAGTTATACTTGGCAAGAGTGCTCTAGAAATAGATTATCCTCTGTGTAACACTTTTGATCAGGATCAGAGTGTTGATGATGAATCAGTTGAAATTTTGGATGAATTGCCAAATAAGGATGCTGAGGCTGGACAGAAGCCATTTTATTCTCATAAGAAAATGAGAGTCACAGGTGAGAATGAGATTGAGAAAGCTACTCAAAGAACTTCATCGTTGAATTGGCCAAGGGATGCTAGAGCTCAGGAAGTAGCTGAAAAATTCGACTCAAACAATCCTTTTTTCACGGTTTGCATAAAGTCTATTGTTCTGAAAAAATGTAGGGTGAGTGTACCAAAATTATTACAAGGTTATATTGAGAAGAAGAATGAGTATGTGACTCTGCAGATTGGGAAAAGATCATGGAATGTGAAGTTGCTCTGTCGTCATGGCCATACAGGCCATCTCTCTGCTGGTTGGTCTGTGTTTGCAAAGGAAAGTGAATTGCAACCAGGGGACGTTTGTGTCTTTGAACTCATAAATAGTGAAGATTTAGTTTTTAAAGTGCATGTTTTCAAACGCCACAGTTTGGAGTATGAAAATTTGAACAATTAG | 879 | 0.38 | MVGSTAILPMIRFFKIILKTNLERLKIPNMFTRRYGGNLSDPVFLKPPDGTGWKIELVKQNGEVWFGKGWEKFAQNYSLDHGYLVLFTYKGTCQFDVVILGKSALEIDYPLCNTFDQDQSVDDESVEILDELPNKDAEAGQKPFYSHKKMRVTGENEIEKATQRTSSLNWPRDARAQEVAEKFDSNNPFFTVCIKSIVLKKCRVSVPKLLQGYIEKKNEYVTLQIGKRSWNVKLLCRHGHTGHLSAGWSVFAKESELQPGDVCVFELINSEDLVFKVHVFKRHSLEYENLNN. | 293 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g07976 | 292 | CDD | B3_DNA | 189 | 281 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | SUPERFAMILY | DNA-binding pseudobarrel domain | 11 | 103 | IPR015300 | - | |
Seca8g07976 | 292 | ProSiteProfiles | B3 DNA-binding domain profile. | 189 | 283 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | Pfam | B3 DNA binding domain | 20 | 98 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | Pfam | B3 DNA binding domain | 189 | 282 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | PANTHER | B3 DOMAIN-CONTAINING | 12 | 278 | - | - | |
Seca8g07976 | 292 | Gene3D | - | 171 | 284 | IPR015300 | - | |
Seca8g07976 | 292 | SUPERFAMILY | DNA-binding pseudobarrel domain | 183 | 282 | IPR015300 | - | |
Seca8g07976 | 292 | CDD | B3_DNA | 12 | 100 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | Gene3D | - | 10 | 104 | IPR015300 | - | |
Seca8g07976 | 292 | SMART | B3_2 | 13 | 103 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | SMART | B3_2 | 189 | 283 | IPR003340 | GO:0003677 | |
Seca8g07976 | 292 | ProSiteProfiles | B3 DNA-binding domain profile. | 10 | 103 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g07976 | Seca-Chr8 | 177428167 | 177429603 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g07976 | 8 | 285 | B3 DNA Binding Superfamily | AT3G18990 | 26.100 | 6.93e-35 | 127 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Seca8g07976 | B3 | 1.5e-13 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g07976 | - | - | gmx:102661781 | 299.286 |