Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07973 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGGCAGTATATAAGATCGAAGGTCCCTCGTTTAAGATGGACTCCTGAGCTTCACCGTTGCTTTGTTCATGCCATTGAGAGCCTTGGAGGTCATCATAAGGCTACACCAAAACTTGTTCTTCAGTTGATGGATGTTAAAGGGCTTACAATTTCACATGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGAGGTGAATTGGGCAGACAAGGTAGGACATCCTCCCATTCCCAACATAGAAACCAATCTTTTGAAGAGCATGATGATGGGTGTGTTGATGAAGTGAATGATGTTGGTACTCAGTACTCTTGTTCAAAACCCATTAGAAAAGAATCAGATTCCTTCTTCTGCTACAGCAACAACGTCTCCTCAAAAAGAGCAAGAATCGAGACGAGGAGTTGCATCTCAGTCTCAGAGAGTCTGCAATGCAGCCAAAGAATAAGAAGTGGTGATGCAGTCCCAAATCCGTACTGCTTTTATGATTATGTGCCAATGGATGAGAGTGAACAACACAAAGGAGGAGGAATAAAGGACTTTTGTGATGGTTATAGTTATACATGGCCTTTCCCTCCTCTGCTACCACATTTTGGAAACCTCACTTCATTCAAATCTCCAAACCAACAATCTCATTTCCTTCAGGTTAATAAATTAAATGATGATAGAAAGAGCACTTCTCAGCCAATTAATGTAGTTGTGAACACTGGGACAGCACATGCAGAAGTTGAAGGAATAGAAAGGCATGAGTTGTCATTGTCACTCACATTGCCAAATCCTTCCCCTCAGAGAAGTAATGCTTCTTCAGGCAGTGAAATCAGTGAGGCAATCTCATCATGCCCTGGGTTTAGCAACTACAAGGACTGCTCTACTTCTTCCACTGTCAAGGAAAGGATTAATTTAGACCTTTCTTTAGCCATATGTGGCAATTGA 957 0.4211 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIESLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGELGRQGRTSSHSQHRNQSFEEHDDGCVDEVNDVGTQYSCSKPIRKESDSFFCYSNNVSSKRARIETRSCISVSESLQCSQRIRSGDAVPNPYCFYDYVPMDESEQHKGGGIKDFCDGYSYTWPFPPLLPHFGNLTSFKSPNQQSHFLQVNKLNDDRKSTSQPINVVVNTGTAHAEVEGIERHELSLSLTLPNPSPQRSNASSGSEISEAISSCPGFSNYKDCSTSSTVKERINLDLSLAICGN. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07973 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 101 IPR046955 GO:0003700
Seca8g07973 318 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Seca8g07973 318 Gene3D - 18 74 - -
Seca8g07973 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Seca8g07973 318 MobiDBLite consensus disorder prediction 77 101 - -
Seca8g07973 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Seca8g07973 318 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Seca8g07973 318 FunFam Myb family transcription factor 17 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07973 Seca-Chr8 177381313 177385828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07973 1 77 G2-like Transcription Factor Family AT1G14600 71.951 2.47e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g07973 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07973 - - lja:Lj5g3v2241390.1 421.779