Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07964 ATGATACAGCAGCAGCAGCAACAGCATTCCTTGGCACCATCAGCATCAACAACACCACCAGCAGCAGCAGCTGCACCACCCCAGAAGAAAAAAAGAAACCAACCTGGAACACCAAGCAAGTATCTTCAAAATTTTATCGGAAAGATCTATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACATAACCTGCCTTGGAAGCTAAAACAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAGCATTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGTTTCATCACCCACAGGGCTTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGACAGCCACCAAACCTGAGTGGTGGAATTGGCAGTCACCTATATGGGAGTAGCAGCAACAACATGGCTTTAGGCCTATCTCAGGTGGTGGGTCCCCAATTGTCCAACATGCAAGACACCCAATCCCCAACTGAACAACTCTTACGACTCGGCGCTCGAACCGGACAATTTGACCACATTCTCCCACCACCACCAGCAGCACCCTCACCTTTCAGTAGACCCTCTCCACCTAATTCCTTCTTCATCCCTGATCAATCCAACCAAAATTACCACCCTGACAAGCCATTGATCCACCACCAGCAAGGACTAATGCAATTGTCTCATGACCTTAACAATCACAACAATTCCCCTTCCAGTAATAACCTCTTCAACCTTCCCTTCCTTTCAAGTAACAACAGCACTAACAGCAGCAACAACTCCTTCTCTGAACACTTCAACAACGGAAACGACGTCGGTTCCAATTTCTTCACTGCAGGAGGAGGAGGTGGTGTGATAACAACTTCGAGCGCGCCTTCTCTCTTCAGCGCATCGCTCCAAAACAACAACGCAATCTCTCACATGTCAGCAACTGCACTCCTTCAGAAAGCGGCTCAAATGGGTGCAACTTCCAGTAACGGCACAGCCTCGTTGTTGAAAAGCTTCGGAAGCAGTTCGTCCGCGAGCAGTGGTGGAACGAAATCTGATCATCATCAGAGGGGGAATATGGTTAGTTATGGGAGCATTTTTGGCGGGAATGAACAGAGTGGTGGAAGTAACCTGCAAGATCTGATGAACTCGTTTGCGGCTGGTGGCGGGAACTCTTCGATGTTTGAGAGTGGAGGAGGGTTTGAAGCATATGATCATAGGGATCAGCCGAAGATGGCAATGACTAGGGATTTCTTAGGTGTGGGTCAGATAGTGAGAAGCATGAGTGGTGGTGGTGCAGGAGCAGGAGCAGGAGCAGGAGGAGGAGGGGTTTCTACACAAAGAGAACAGCAACAGCATGGGTTTAACTTGGAGGTAGAAAGAAATGCTGCGGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1668 0.4838 MIQQQQQQHSLAPSASTTPPAAAAAPPQKKKRNQPGTPSKYLQNFIGKIYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSGGIGSHLYGSSSNNMALGLSQVVGPQLSNMQDTQSPTEQLLRLGARTGQFDHILPPPPAAPSPFSRPSPPNSFFIPDQSNQNYHPDKPLIHHQQGLMQLSHDLNNHNNSPSSNNLFNLPFLSSNNSTNSSNNSFSEHFNNGNDVGSNFFTAGGGGGVITTSSAPSLFSASLQNNNAISHMSATALLQKAAQMGATSSNGTASLLKSFGSSSSASSGGTKSDHHQRGNMVSYGSIFGGNEQSGGSNLQDLMNSFAAGGGNSSMFESGGGFEAYDHRDQPKMAMTRDFLGVGQIVRSMSGGGAGAGAGAGGGGVSTQREQQQHGFNLEVERNAAAPSGQSFGGGGGNFQ. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07964 555 MobiDBLite consensus disorder prediction 262 278 - -
Seca8g07964 555 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Seca8g07964 555 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Seca8g07964 555 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g07964 555 Gene3D Classic Zinc Finger 123 202 - -
Seca8g07964 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Seca8g07964 555 Gene3D Classic Zinc Finger 52 117 - -
Seca8g07964 555 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Seca8g07964 555 SMART c2h2final6 145 165 IPR013087 -
Seca8g07964 555 SMART c2h2final6 110 140 IPR013087 -
Seca8g07964 555 SMART c2h2final6 69 91 IPR013087 -
Seca8g07964 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 522 IPR031140 -
Seca8g07964 555 MobiDBLite consensus disorder prediction 508 555 - -
Seca8g07964 555 MobiDBLite consensus disorder prediction 415 435 - -
Seca8g07964 555 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Seca8g07964 555 MobiDBLite consensus disorder prediction 261 283 - -
Seca8g07964 555 FunFam protein indeterminate-domain 12-like 48 116 - -
Seca8g07964 555 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07964 Seca-Chr8 177270105 177275722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07964 28 508 IDZ Gene Family AT2G02070 50.551 2.67e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g07964 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07964 K25870 - gmx:100786121 592.423