Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07951 ATGGGTGTGGGCATATCAGTGTTGATAGCACTAAAAGCAACAACCCTATTTCTATGCTTCGTTTACCTAAGAAACCTTGGTTTCACTCTCTTATCTGCTCCCTTTCTTTATGCTTCTTTGGTCTCTTTCTTGGTCTCAATCGCATCACACCCATCCATTGACCTTCCAATGCTTCTAGGGAAAAGCAGTGATGGAACCTTCCCCATTTTGTCACTCATCATCTTCAGCCCTTATCTCTACTTCGTTCGAATCTTCTCCACTCTTCGAAGACTCAGAAGTGGGGAACCTCCTTACACCCAAGTTCATGAGGGCCTCTATGTCGGTGGCTGGCCTTCTTCGCCGGAAAAGTTGCCGCCCGGTGACCCTGCCATCATTGACTGCACTTGTGAGTTTCCGAGGATGAAAGGGTTCTCTGGTGGGCTACCTTATATGTGCGTTCCAACTTGGGATACTAGGTCCCCTCAACCTGCTGATATTGAATCTGCTGTCAAGTGGGCTTGTCGAAAGAGGGAACTCAATAGGCCCATTTTTGTCCACTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTTATGTGTGCACTGTTAGTGGCACTAGGTATCACAGAGGATTGGAAGAATGCTGAGAAGCTAATCAAGCAAAAACGCCCTTACATTCGGATGAATGCTCTCCATCGCAAGGCGCTTGAAGAATGGTCCAGACACCGATTATCTGTGCCAAAGAAGTAG 726 0.4711 MGVGISVLIALKATTLFLCFVYLRNLGFTLLSAPFLYASLVSFLVSIASHPSIDLPMLLGKSSDGTFPILSLIIFSPYLYFVRIFSTLRRLRSGEPPYTQVHEGLYVGGWPSSPEKLPPGDPAIIDCTCEFPRMKGFSGGLPYMCVPTWDTRSPQPADIESAVKWACRKRELNRPIFVHCAYGHGRSVAVMCALLVALGITEDWKNAEKLIKQKRPYIRMNALHRKALEEWSRHRLSVPKK. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07951 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 235 IPR029021 -
Seca8g07951 241 Gene3D Protein tyrosine phosphatase superfamily 98 236 IPR029021 -
Seca8g07951 241 PANTHER - 3 240 - -
Seca8g07951 241 Pfam Dual specificity phosphatase, catalytic domain 124 233 IPR000340 GO:0008138|GO:0016311
Seca8g07951 241 SMART dsp_5 97 234 IPR020422 GO:0006470|GO:0008138
Seca8g07951 241 CDD DSP_bac 94 233 - -
Seca8g07951 241 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 157 226 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07951 Seca-Chr8 177149535 177153711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07951 141 233 Protein tyrosine phosphatase (PTP) family AT5G56610 30.526 5.14e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07951 - - aprc:113873203 467.233