Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07949 ATGGATACGTCAAATCCTGCTGCATTTGTAAATGCCCAGTTGCTTCCTAATTTTATAGGGAAGAAAGTGCGAGCAGTGGTTCAGGTGAATCGTTTCGATGGTGAGGTGACCACCGCAAAATCCACTGATGATAATCAACTAACCATAAAAGGGTTGCCACAAGTCCCTCTCATGAATTATGTTGAGGTCATTGGTATTGCTGAAAGTAACAACTGCATTAATGCCGAAATATGGACTGATTTTGGCAACACATTTGATACCAACTCTTACAATCAGCTATGCCAACTAGCAAATGGTGATTTCAGAAATCTCTTTCTCTAA 321 0.4019 MDTSNPAAFVNAQLLPNFIGKKVRAVVQVNRFDGEVTTAKSTDDNQLTIKGLPQVPLMNYVEVIGIAESNNCINAEIWTDFGNTFDTNSYNQLCQLANGDFRNLFL. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07949 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Seca8g07949 106 Gene3D - 2 106 IPR012340 -
Seca8g07949 106 Pfam Replication factor A protein 3 1 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca8g07949 106 CDD RPA3 6 105 - -
Seca8g07949 106 SUPERFAMILY Nucleic acid-binding proteins 5 102 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07949 Seca-Chr8 177140839 177142386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07949 1 106 Core DNA Replication Machinery Family AT4G18590 61.321 8.55e-47 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07949 K10740 - gmx:100781484 182.956