Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07945 ATGGGATCCGAAGCTCTTGTTCCAAAATGGGCATCCAATCCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGGCCCATGGTGTATGGTTGCTTGTACTGTTCTCGCTCTTACCAGAAGACCCTAGCTACTTTGAGTTTTGCAGATTCTAAAACACTAAAAGAAGAGAAGAGGGAAGAGTTATTTGAAGCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAGCTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCAATGGGCCTCATCGACAGGGTACTAAAGATGGGAGTGCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAAAAGTTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCAAGCTTTAAGAGACTGGGTGCTTGATGAGACTGCTGAAAACATGCATAAGAACTTCGGCTCTGGATATCCTGGAGATCCTCATACCAAGTCTTGGCTAGAACACCACAAACATTCTATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCACCACTTATTTCAAAGATGTTGCAGAAGTCTTATGGGAGTCTGACAAATCGGATGAAGACGGTGGCTGCAATAATAGTGGCAAGCGGCAATTGAAATTAAGCAATGTAGGTTTCACCACATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGGCGCTGTAGGTTTTTTCAAGCTCGGAAACTTGAGCAACTCACTCATTTCTAA 894 0.4251 MGSEALVPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCSRSYQKTLATLSFADSKTLKEEKREELFEALKANDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSKSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDQALRDWVLDETAENMHKNFGSGYPGDPHTKSWLEHHKHSIFGFPTLVRFSWGTCTTYFKDVAEVLWESDKSDEDGGCNNSGKRQLKLSNVGFTTSKRRSEEIESSGKGRCRFFQARKLEQLTHF. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07945 297 CDD RNase_HII_eukaryota_like 17 233 - -
Seca8g07945 297 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Seca8g07945 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 284 IPR001352 GO:0003723|GO:0004523
Seca8g07945 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Seca8g07945 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Seca8g07945 297 Gene3D - 3 186 IPR036397 GO:0003676
Seca8g07945 297 FunFam Ribonuclease 188 235 - -
Seca8g07945 297 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Seca8g07945 297 FunFam Ribonuclease 2 186 - -
Seca8g07945 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07945 Seca-Chr8 177125979 177129282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07945 1 297 Core DNA Replication Machinery Family AT2G25100 67.677 5.79e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07945 K10743 - gmx:100779875 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07945 8 177125979 177129282 Seca8g07945 8 177125979 177129282 ECH