Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07943 ATGGTTTCCAAGCGAGGGAGGAGGAGGACGATGGAAATGGAAGGAAGGCGAGGAACCACCACCATTGTCGCCGGTGATGCTCTCGTCCACCTCGAGGAGCAAATCCGTCTTCAGACCTCCGATCCTCATGCTCAGATAGAAGATTCCATCGAAATCATCGCCGTACTGGAAGAACGACCTCACAGCCACCACTTCTCCGCCAAGAAGGAGTGTGTTCTCCTCGAGATCAAAAGCGGAGACATCATTTTAGCTTTTGAAGAAAAGCAAATTAAGGAAGGACGTTGCATCACTGTTACTTCCGATCTCGTCAATTCAAACACAAGCATCAGTGTCGTTGCGAAGGTCTTCATCACAGGAATGGAGATAGCGCGACTTGACCTCTACAATAACGACATAATTGTGGTTCACGACCATCAAGGTTTCGTCTCTTCACTATCTTTGTTCTCTTATGAGGTACAGAGGATGACCTTGTTCTCCTTCCCATTCCATTATGATCATCGCTCCGGTCGACATCTCCATTCTCTCATGTTCAGGTTCCGTAACAACAAATTCAGCATGCTTGATCTCGCCATAAAGCATTTGTTTGATATATATTTTGAATGGAATGTCCAACAAATGTTTGATGTTATGTCTGATAGAGATGTGCAGACCTTATTTGCTGAAATGCTTAAAACTTTTACACCGTTTCAAATTGTTTCTAGCTTTCCATTTGATGTCGGACCTGAGACTATGGGAATAATATTCCTAATGAAAACAGCACTTGGTCTAACATCCACTTTCCTTCTTGCTGCTGAAATATGGTTCATAGGGATCATTTTGAAAAATGTTGATCTGTTTAATGAAGATGATTTTGGGATGTCTTCCCTGTGGTCGTTGCTTCCTGGAACTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGACGTTTCAGATGCATTGGTCCATTTGCAACATATTAATTGCACATCATCACTGAATGGTTATGCCGATATTTCTTCTTTGCTCAGTGATTTAGGCATGAGCTTGAAAATGCTTTCTCCATTATATCCACATTTTTCCCTTGAAACAGCAGACCCTTTAGTTCTTTCTCCATTATATACACATCTCCATTATATGAAAAACACTTGTGTTTTGAGTTCATTGGTGACAATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATTGGGTCTTCCAAGAAACTAAGGATCGTAATGTGGTTTGTTGGACAGTTATGATAACAGTTTGTCACCAACATGGCTGCGCAAATGAAGCAATTGAGTTATTTGAGGAGATGCTCAAAGAAGGGGTTGTGCAGGAATACATTACTTTTGTTTCTGTGCTATCAGCATTTAGATCAAGTGCAATTATGGGATTTCTTCTTGCTGCCTATGGTCTTTTGGTTCTTTACATTGGATCAACTTGTTCAAGATTTACTATATGTGGTGATGACTGGGGTGGTCCTTTTGAAGCCATCACTGGTTATGGTCTTGGTGGGTCTTCTATGGCTTTGTTTGGAAGAGTTGGTGGAGGTATCTATACTAAGGCTGCTGATGTTGGTGCTAATCTTGTTGGCAAGGTTGAAGGAAATATTCCCGAGGATGATCTAAGAAATCCAACTGTGATTGTTGATAATGCTGATGATACTGTTTGGGATATAGTTGTTGCCATAATTGGCTTTATGGTCCAATATCAGCAATTGGAGCTATTTTTGCTGGTATTGATGGTCTTGATCATGCAATGA 1749 0.4117 MVSKRGRRRTMEMEGRRGTTTIVAGDALVHLEEQIRLQTSDPHAQIEDSIEIIAVLEERPHSHHFSAKKECVLLEIKSGDIILAFEEKQIKEGRCITVTSDLVNSNTSISVVAKVFITGMEIARLDLYNNDIIVVHDHQGFVSSLSLFSYEVQRMTLFSFPFHYDHRSGRHLHSLMFRFRNNKFSMLDLAIKHLFDIYFEWNVQQMFDVMSDRDVQTLFAEMLKTFTPFQIVSSFPFDVGPETMGIIFLMKTALGLTSTFLLAAEIWFIGIILKNVDLFNEDDFGMSSLWSLLPGTQAGPGFQLFGSDADVSDALVHLQHINCTSSLNGYADISSLLSDLGMSLKMLSPLYPHFSLETADPLVLSPLYTHLHYMKNTCVLSSLVTMYGKCGNLFDAYWVFQETKDRNVVCWTVMITVCHQHGCANEAIELFEEMLKEGVVQEYITFVSVLSAFRSSAIMGFLLAAYGLLVLYIGSTCSRFTICGDDWGGPFEAITGYGLGGSSMALFGRVGGGIYTKAADVGANLVGKVEGNIPEDDLRNPTVIVDNADDTVWDIVVAIIGFMVQYQQLELFLLVLMVLIMQ. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07943 582 NCBIfam pentatricopeptide repeat 409 440 IPR002885 -
Seca8g07943 582 Gene3D Tetratricopeptide repeat domain 367 459 IPR011990 GO:0005515
Seca8g07943 582 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 450 557 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Seca8g07943 582 Pfam PPR repeat 381 408 IPR002885 -
Seca8g07943 582 Pfam PPR repeat 409 439 IPR002885 -
Seca8g07943 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Seca8g07943 582 Pfam Inorganic H+ pyrophosphatase 451 556 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07943 Seca-Chr8 177094763 177099236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07943 436 555 Primary Pumps ATPases AT1G15690 70.248 2.59e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07943 K23025 - cave:132166650 158.303