Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07937 ATGTTTCGAGAGACCAGTGCCATGGCCGCCACCACGACGCGGTGGCCGACTCAGCAACCTCAACCGAGTCAGTGGACTCGTTACCAAGACAAACTCTTTGAGCGAGCGCTATTGACCGTGTCCGATGACCAGCCGGACCGGTGGGAGAAGATCGCCGAGCAGGTTCCTGGAAAGTCGGCGGCGGAGGTGAGGAACCACTACGAGGCCTTGGTTCACGACGTGTATGAGATCGATTCAGGCCGAATCGAGGTTCCGAGTTACTCAGATGACTCAGCGGCGGATTGTGGATTGTCAAATTGGGATTCTTCTAATCAGATCTCTTTCGGGTCGAAACCTAAACATAGCGAAAACGATAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACATAGGCTGTTTCTCATTGGTCTGAGCAAATTTGGCAAGGGAGATTGGAGAAGCATATCAAGAAATGTTGTTGTGTCAAGAACACCAACTCAAGTAGCTAGCCATGCTCAGAAATACTTCCTCCGCCAGAATTCGGTGAAGAAAGAGAGGAAGCGATCAAGCATCCATGACATAACCACAGTGGATAGTAACTCAGTGCCTGTCCCCATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAATCACAAGAAATGCAGCAATACCCATCAAACAATTTGCATGATCATATGGGTAGATTTGGGTACTCAAACTTTGGGTTTTAA 720 0.4917 MFRETSAMAATTTRWPTQQPQPSQWTRYQDKLFERALLTVSDDQPDRWEKIAEQVPGKSAAEVRNHYEALVHDVYEIDSGRIEVPSYSDDSAADCGLSNWDSSNQISFGSKPKHSENDRKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVSRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSMQQSQEMQQYPSNNLHDHMGRFGYSNFGF. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07937 239 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Seca8g07937 239 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Seca8g07937 239 FunFam Transcription factor SRM1 17 84 - -
Seca8g07937 239 CDD SANT 25 71 IPR001005 -
Seca8g07937 239 MobiDBLite consensus disorder prediction 104 124 - -
Seca8g07937 239 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 224 IPR043363 -
Seca8g07937 239 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Seca8g07937 239 ProSiteProfiles Myb-like domain profile. 17 71 IPR001005 -
Seca8g07937 239 MobiDBLite consensus disorder prediction 1 24 - -
Seca8g07937 239 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Seca8g07937 239 SMART sant 21 73 IPR001005 -
Seca8g07937 239 SMART sant 121 171 IPR001005 -
Seca8g07937 239 Pfam Myb-like DNA-binding domain 23 67 IPR001005 -
Seca8g07937 239 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Seca8g07937 239 FunFam transcription factor MYB1R1 123 174 - -
Seca8g07937 239 CDD SANT 124 169 IPR001005 -
Seca8g07937 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Seca8g07937 239 SUPERFAMILY Homeodomain-like 119 174 IPR009057 -
Seca8g07937 239 Gene3D - 17 84 - -
Seca8g07937 239 Gene3D - 123 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07937 Seca-Chr8 177054969 177057207 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07937 Myb_DNA-binding 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07937 - - gmx:547481 369.777