Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07930 ATGCTTCCCATCACCTGCATTCTTTTAATGTGCCTCCTCCTCAGTTCTTTCTCACCCCCAATCAAAGCCAAACCCTTCTCAAACCTCACCTTGCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATGAAGTTCAACGTTTTTTTTTTTACCATTGCAGGAAAATCAATGTGTCACTCTCCAGAAGGCAAATGCTCTCAAAGGACCAAGCTACTTCATGTCTCACAGGAAACCCAGTGGACGATTGCTGGCGTTGCGACCCAAACTGGGCGGCGAACCGTCAGAAGCTGGCGGATTGCGGCATCGGTTTCGGACGCGCCGCCATGGGCGGAAAAGGCGGTCAGATCTACATCGTAACCGATTCCTCCGATAGGGACCCAGCGAACCCCGTTCCAGGAACCCTCCGTCACGCCGTTATCCAAGACGAACCGTTATGGATCGTTTTCGCCGCCGACATGACCATAAATCTGAGGCATGAACTAATCTTCAACAGCTTCAAAACCGTTGACGGTCGCGGCGCTAACGTCCACGTCACCGGCCACGGCTGCATAACGCTCCAGTACGTGTCCAACGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGTAACACTAACATACGCGCCAGTCCAACGCATGTAGGATGGAGAGGCGTATCGGACGGTGATGGGATATCCATCTTCGGATCAAGGAACATCTGGATCGACCATTGTTCACTCTCTTACTGCACGGACGGCTTGATCGATGCCATCATGGGGTCCACTGCTATAACCATATCTAACAACCATTTCGCGCACCACGATGAGGTCATGCTCCTTGGCCACAACGATAAGTACTCGCCAGATAGAGGAATGCAGGTTACCATTGCGTTCAATCACTTCGGTGAAGGGCTTGTTCAGCGAATGCCACGTTGCAGGCTCGGTTATATACATGTAGTTAACAATGATTTCACGCAGTGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCACCGATCCTAATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGAGAGACAGTGGAGTGATTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTACCATCGGGTGCAGGGCTCAGTGCTCAGTACGCACAAGCGTCCAGTGTGCAACCCAAATCAGCGGTGCAAATTGACCAGCTCACAATGTACTCAGGAGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTAACCGGAGCCACCAGCAAGGGCAACAGTGAGGGTTCCAGCAGTGACGATGGGGACTTCTTCGGTATGATATTCAAAGGTAGCAGCAGCCAAGCAGCACCACCGCCATCACCCTCCTCATCCTTTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTACCACCAACCATGTTATTCTATTATCATTACTATGA 1521 0.5069 MLPITCILLMCLLLSSFSPPIKAKPFSNLTLPHQHPYPEAVVHEVQRFFFYHCRKINVSLSRRQMLSKDQATSCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRAAMGGKGGQIYIVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPTDPNAKEVTKRVDTDERQWSDWNWRTEGDIMVNGAFFVPSGAGLSAQYAQASSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSEGSSSDDGDFFGMIFKGSSSQAAPPPSPSSSFVFVSTFLSLLIIFILDTTTNHVILLSLL. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07930 506 PANTHER PECTATE LYASE 18-RELATED 35 418 IPR045032 GO:0030570
Seca8g07930 506 SUPERFAMILY Pectin lyase-like 63 393 IPR011050 -
Seca8g07930 506 FunFam Pectate lyase 77 419 - -
Seca8g07930 506 Pfam Pectate lyase 160 341 IPR002022 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Seca8g07930 506 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Seca8g07930 506 Gene3D - 77 419 IPR012334 -
Seca8g07930 506 SMART amb_all 152 349 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07930 Seca-Chr8 176959591 176965463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07930 1 503 Polysaccharide Lyase AT3G53190 60.630 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07930 K01728 - gmx:100808438 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07930 8 176959591 176965463 Seca8g07930 8 176959591 176965463 ECH