Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07923 ATGGCGGTTGTGGGAGGAGCAGGTCCCATTGGTGTTCAAGGATGGGGAGACATAAAGAGTCTCAGTATCCAATGCATCACCGGACGGTGGTTCGTGGTGTTTGCTTCCTTTCTAATCATGGCAGCTGCCGGAGCCACCTACATGTTTGGTCTCTACTCTGGTGACATCAAAACCACTCTTGGCTATGACCAAAGCACTCTCAATCTCCTCAGTTTCTTCAAAGACTTTGGTAGCAACGTTGGTGTCCTCTCTGGCCTAATTAATGAACTCTGTCCACCTTGGATAGTCCTAGCCATAGGTGCAGTCCTTAACTTCTTAGGCTACTTCATGATTTGGCTCTCTGTCACTAAAAAAATTCCAAGACCTCAAGTGTGGCAGATGTGTCTCTACATCTGCATAGGTGCTAATTCTCAATCCTTTGCCAACACTGGTTCCCTTGTTACTTGTGTCAAGAACTTCCCAGAAAGCCGTGGGGTTGTCTTAGGCATTCTTAAAGGCTATGTGGGTCTTAGTGGTGCTATCATCACACAACTTTACTTTGCTATTTACTATAATGACACAAAAGGTTTGATTTTGTTCATTGGTTGGCTTCCAGCTGCTATTTCCTTTGTTTTCCTTCGAACAATTCGTTACATGAAGCCTGTTAGAAGGCCTAATGAACTCAAGGTTTTCTACAATTTCTTGTATATTTCACTTGGTCTTGCTGGGTTTTTACTTGTCATGATTATTATAGAGAAAAGGGTCCACTTCACACAGAGTGAATATGGTGTCAGTGCTGCTATGGTCACTTTCTTGATGTTCCTTCCACTTGCTGTTGTTTTCTTTGAAGAATACAAGATCTGGCAGGGTAAAAAGCTTGAATTGGTTGATCTTGATCCCAAGCCACTCAAAATAGTAACACAGGGTGAAAAGGTCAATCCTGATGAGGCTACTAAAATTGTTGACTCTGTTTCAGCACCAAAAGTAAAGGAAATAGGCATAGTTTCCAATGAAATTGCCCAAGAAGACAACAGTACTAAATGGTGGCAAAATGTGTTTAGTCCACCACCTAGAGGTGAGGACTATACCATACTTCAAGCCCTTTTCAGCATTGACATGTTAATTTTATTTGTGGCTTGCATTTGTGGTGTTGGGGGAACTTTGACTGCAATTGATAATTTGGGTCAGATAGGAACCTCACTTAGATACCCCAAGAGAAGCATAAGCACTTTTGTGTCCCTAGTTAGTATTTGGAATTATCTAGGACGTGTTTTCTCTGGATTTGTTTCTGAACATTTTCTAACAAAGTACAAGTTCCCTCGTCCTCTTATGCTTACTTTAACCATGCTCTTGTCATGTGTTGGTCACCTTTTGATAGCATTTGATGTGCCAAATGGTCTCTATGTGGCTTCAGTAATTATTGGGTTCTGTTTTGGTGCACAATGGCCTTTACTTTTTGCCATTATATCTGAGCTTTTTGGGCTTAAATACTATGCAACTTTGTACAACTTTGGAAGTGTAGCAAGTCCACTTGGGTTATATGTGCTTAATGTGAAGATCACTGGGCATTTATATGACAAAGAAGCAAAGAAGCAATTGGCAGCATTGGGGCTACAAAGAAAGGAAGGACAGGAATTGAATTGTGTTGGGGTCAATTGCTTCAAGTTATCCTTCATTATTATCACAGTTGCAACTTTCATAGGTGCAATTGTTTCACTCATTTTGGTGGCAAGGACAAGAAAGTTTTACAAAGGGGACATATACAAGAGGTACAGGGAAGAGGCAACGGTTGATCAAGAAACTGAAATGGGCACCAAAGTGGAGAATGGAGACAAGACAGGGCAAGATGCCAAAATTGGTCAGCATGTGGTGTCAGCTTAG 1860 0.4134 MAVVGGAGPIGVQGWGDIKSLSIQCITGRWFVVFASFLIMAAAGATYMFGLYSGDIKTTLGYDQSTLNLLSFFKDFGSNVGVLSGLINELCPPWIVLAIGAVLNFLGYFMIWLSVTKKIPRPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYFAIYYNDTKGLILFIGWLPAAISFVFLRTIRYMKPVRRPNELKVFYNFLYISLGLAGFLLVMIIIEKRVHFTQSEYGVSAAMVTFLMFLPLAVVFFEEYKIWQGKKLELVDLDPKPLKIVTQGEKVNPDEATKIVDSVSAPKVKEIGIVSNEIAQEDNSTKWWQNVFSPPPRGEDYTILQALFSIDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKRSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYKFPRPLMLTLTMLLSCVGHLLIAFDVPNGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKITGHLYDKEAKKQLAALGLQRKEGQELNCVGVNCFKLSFIIITVATFIGAIVSLILVARTRKFYKGDIYKRYREEATVDQETEMGTKVENGDKTGQDAKIGQHVVSA. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07923 619 FunFam Nodulin family protein 357 578 - -
Seca8g07923 619 Pfam Nodulin-like 29 274 IPR010658 -
Seca8g07923 619 SUPERFAMILY MFS general substrate transporter 29 575 IPR036259 -
Seca8g07923 619 Gene3D MFS general substrate transporter like domains 357 577 IPR036259 -
Seca8g07923 619 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 30 582 - -
Seca8g07923 619 CDD MFS_Mch1p_like 28 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07923 Seca-Chr8 176887413 176889272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07923 16 587 Nodulin-like Gene Family AT2G39210 70.105 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07923 - - pvu:PHAVU_007G024800g 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07923 8 176887413 176889272 Seca8g07923 8 176887413 176889272 ECH
Seca8g05304 8 143634320 143636029 Seca8g07923 8 176887413 176889272 ECH
Seca2g04691 2 133057868 133059739 Seca8g07923 8 176887413 176889272 ECH