Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07896 ATGTCCCAGTGTCGGAAACAACTAGCAAATAGAATGAAGCCAAGGTCTCAGTCCTTGCAAGAGTCCAAGATGACAAAAAAACTGAGGATTATTTATGACGATCCTGATGCCACCGATTCTTCATCCGATGACGAGCCAGAGATGATGGTGGAACAAAGAAAAGTGAAAAGAACCATTCATGAGATCTCACTTCCCTTGGTTTCATCCATCTCTCCCTCTCCTGAAACTAGCTCTTGTGGAGAGAACAAGAACAACAATGCGATGATGAAGACTTGCCCTGAAGGTGAACCTCAAAACAAGAAGAGGGCTTCAACCCAAACCCCATCAACTGGAAGGCAATCTTGTGCCAAATACAGAGGTGTTCGGCAGAGGAAGTGGGGAAAATGGGCTGCTGAGATTCGTGACCCTTTCAGGAGTTGCCGTGTCTGGTTAGGCACTTTCAACACTGCTGAAGAGGCTTTCCAAGCTTATGAGACTAAAAGACTCGAATTTGAAGCGATGAAGGCTCAAGCATGCAAAAATGGTTCTTCATCTGCACCTTTGCCACCAGTTTCTGATAATACTGACAAGAGTAACCTGTGCAACTCTTCTGCTGCTGCATCTGCAGTGTCTGTATCAGAAAAATTTTCTACTACTTCGGAGGATACAGAGAGCTTGTTCTCACACACATCACCATCCTCCGTGCTTGAACTGGATACTGTGGCTTCCAATTCGACTGAGAAGCTTGACATTTCAAGCAACAAAGCTGTTGAGACTAATGATTTGGTGGCCAAAGAAGCTGTTGAGGCGAATGATTTCGTGGCTGAACTAGCGGGGATAGAGATACCTGATTTGAGTCTGTTGAACATGCCTCCACCACCTACTGTTCCTGCTCCATCTGGCTCTGAGACTAATCTTACATTTGATTTTGATTGGTTATCTTTTGATGATTATGGGCAGGGTTTAGATGACCTTGGTGGCCTGGAGGATATCCGTATTTGTGGATTTGAAGACAATGAGCATAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGCGCAGATGAGATTGCTGGTTGGACTGAGGAACCCCTCAATATACCTTGTGCCTAA 1092 0.4487 MSQCRKQLANRMKPRSQSLQESKMTKKLRIIYDDPDATDSSSDDEPEMMVEQRKVKRTIHEISLPLVSSISPSPETSSCGENKNNNAMMKTCPEGEPQNKKRASTQTPSTGRQSCAKYRGVRQRKWGKWAAEIRDPFRSCRVWLGTFNTAEEAFQAYETKRLEFEAMKAQACKNGSSSAPLPPVSDNTDKSNLCNSSAAASAVSVSEKFSTTSEDTESLFSHTSPSSVLELDTVASNSTEKLDISSNKAVETNDLVAKEAVEANDFVAELAGIEIPDLSLLNMPPPPTVPAPSGSETNLTFDFDWLSFDDYGQGLDDLGGLEDIRICGFEDNEHSELPDFDFGDFGADEIAGWTEEPLNIPCA. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07896 363 SUPERFAMILY DNA-binding domain 117 164 IPR016177 GO:0003677
Seca8g07896 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 247 - -
Seca8g07896 363 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 MobiDBLite consensus disorder prediction 1 49 - -
Seca8g07896 363 ProSiteProfiles AP2/ERF domain profile. 117 176 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 CDD AP2 116 157 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 MobiDBLite consensus disorder prediction 68 116 - -
Seca8g07896 363 MobiDBLite consensus disorder prediction 20 36 - -
Seca8g07896 363 Gene3D AP2/ERF domain 116 173 IPR036955 GO:0003700|GO:0006355
Seca8g07896 363 SMART rav1_2 117 179 IPR001471 GO:0003700|GO:0006355
Seca8g07896 363 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07896 Seca-Chr8 176561978 176564534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07896 20 362 AP2-EREBP Transcription Factor Family AT1G68550 34.473 3.60e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g07896 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07896 - - gmx:100306276 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07896 8 176561978 176564534 Seca8g07896 8 176561978 176564534 ECH